Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1331 ATGGCCAAGACCAAGAAATCGAAGAAGCAAAAGCTCACTAAAAAGACTCCTAAGAAGATCGAGAAAAAGCTTAAATCCAAGAAGGTGGAAAAAGCCCTAGCCACCAAACCTTCCGATTCCGACTCCGATTCAGACTCCGGCTTCGACAAGCTCCAGAAACTTCTCGAACCTTACTCTAAGGATCAACTCATAGGCTTTATTTCCGATGCCGCCGCCTCCGATTCCTCTCTCTTCCAGCGCATCCGCGAAACCGCCGATCGCGACGTCTCTCACCGGAAAATCTTCGTCCACGGCCTCGGTTGGGACACTACTCGCGAAACCTTGCTGGCGGCGTTTGAACCCTATGGCCAAATTGAGGACTGCAATGTCGTCACGGATCGGAATACTGGAAAGGCCAAGGGCTATGGATTCGTTCTCTTCAAGACGCGCCAAGGTGCTGTCAAGGCGCTGAAGCAGCCGGGGAAGAAGATTAATAACCGTATGACGCAGAGCCAGCTCGCGTCGATGGGTCCGTCGCCTCCGCCGCAGAGCCAGGACACCGTCGGCCGGAAGATCTACGTGAGTAATGTTCAGGCCGATGTGGATCCTGAGAGATTGCGGTCGTTCTTTGCGAAGTTCGGGGAGATCGAGACCGGACCAATCGGGTTCGATACGCAGACTGGGAAGTCGAGGGGGTTTGCGCTTTTTGTGTATAAGAATCAGGAAAGCGCAAGGAAGGCTCTAGAAGATCCGTACAGGATATTTGAGGGGCATCAATTGCATTGCCAGAAGGCAACGGAGGGGAAGAACAAGGTCCCGGCACAACCGCAACCACAGCTGGCAGCGGTTGCTGCGACGCAGAATTTCATGTTAAGCCAGCATCCAACTCTCAATACGTTGTACAGTGGGTTGCTCGCCCATCCGAATGCAAGTATGATTGGGGCGGCAGCGGTTAATCCGGCGGTAGCAGGAGCTATGAACCCGGGCGTGATTTCGTCGAGCCAAGTTGGTTCGGTCATTGGTAGTGTGGAAGGTTTAGGAGGGTATGGGACGCATGGGGTGGCTGGTTTTGGGGGGACTCCTTCAGTGCTCGGCCCTCCAAGTCTCGGTCTGCAGCATGCCTACCCAAGTACACAGCTCGGGCAATCTTCGGTGGGTAGGGTTCAAGGGACTGGTGTTGGGACTTTCGGTGGTTACCCGTCGTATATGTGA 1191 0.5424 MAKTKKSKKQKLTKKTPKKIEKKLKSKKVEKALATKPSDSDSDSDSGFDKLQKLLEPYSKDQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETLLAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLASMGPSPPPQSQDTVGRKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSRGFALFVYKNQESARKALEDPYRIFEGHQLHCQKATEGKNKVPAQPQPQLAAVAATQNFMLSQHPTLNTLYSGLLAHPNASMIGAAAVNPAVAGAMNPGVISSSQVGSVIGSVEGLGGYGTHGVAGFGGTPSVLGPPSLGLQHAYPSTQLGQSSVGRVQGTGVGTFGGYPSYM* 397
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1331 396 Gene3D - 174 266 IPR012677 -
Vvi7g1331 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 192 IPR000504 GO:0003723
Vvi7g1331 396 SUPERFAMILY RNA-binding domain, RBD 168 267 IPR035979 GO:0003676
Vvi7g1331 396 Gene3D - 1 171 IPR012677 -
Vvi7g1331 396 PANTHER GEO13361P1-RELATED 179 342 - -
Vvi7g1331 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 253 IPR000504 GO:0003723
Vvi7g1331 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Vvi7g1331 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Vvi7g1331 396 MobiDBLite consensus disorder prediction 1 25 - -
Vvi7g1331 396 MobiDBLite consensus disorder prediction 1 46 - -
Vvi7g1331 396 SUPERFAMILY RNA-binding domain, RBD 91 175 IPR035979 GO:0003676
Vvi7g1331 396 SMART rrm1_1 93 165 IPR000504 GO:0003723
Vvi7g1331 396 SMART rrm1_1 184 256 IPR000504 GO:0003723
Vvi7g1331 396 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi7g1331 Vvi-Chr7 17383655 17389313 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1331 178 269 C2H2 Transcription Factor Family AT2G19380 29.897 4.43e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1331 K12741 - vvi:100266260 721.079