Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g1331 | ATGGCCAAGACCAAGAAATCGAAGAAGCAAAAGCTCACTAAAAAGACTCCTAAGAAGATCGAGAAAAAGCTTAAATCCAAGAAGGTGGAAAAAGCCCTAGCCACCAAACCTTCCGATTCCGACTCCGATTCAGACTCCGGCTTCGACAAGCTCCAGAAACTTCTCGAACCTTACTCTAAGGATCAACTCATAGGCTTTATTTCCGATGCCGCCGCCTCCGATTCCTCTCTCTTCCAGCGCATCCGCGAAACCGCCGATCGCGACGTCTCTCACCGGAAAATCTTCGTCCACGGCCTCGGTTGGGACACTACTCGCGAAACCTTGCTGGCGGCGTTTGAACCCTATGGCCAAATTGAGGACTGCAATGTCGTCACGGATCGGAATACTGGAAAGGCCAAGGGCTATGGATTCGTTCTCTTCAAGACGCGCCAAGGTGCTGTCAAGGCGCTGAAGCAGCCGGGGAAGAAGATTAATAACCGTATGACGCAGAGCCAGCTCGCGTCGATGGGTCCGTCGCCTCCGCCGCAGAGCCAGGACACCGTCGGCCGGAAGATCTACGTGAGTAATGTTCAGGCCGATGTGGATCCTGAGAGATTGCGGTCGTTCTTTGCGAAGTTCGGGGAGATCGAGACCGGACCAATCGGGTTCGATACGCAGACTGGGAAGTCGAGGGGGTTTGCGCTTTTTGTGTATAAGAATCAGGAAAGCGCAAGGAAGGCTCTAGAAGATCCGTACAGGATATTTGAGGGGCATCAATTGCATTGCCAGAAGGCAACGGAGGGGAAGAACAAGGTCCCGGCACAACCGCAACCACAGCTGGCAGCGGTTGCTGCGACGCAGAATTTCATGTTAAGCCAGCATCCAACTCTCAATACGTTGTACAGTGGGTTGCTCGCCCATCCGAATGCAAGTATGATTGGGGCGGCAGCGGTTAATCCGGCGGTAGCAGGAGCTATGAACCCGGGCGTGATTTCGTCGAGCCAAGTTGGTTCGGTCATTGGTAGTGTGGAAGGTTTAGGAGGGTATGGGACGCATGGGGTGGCTGGTTTTGGGGGGACTCCTTCAGTGCTCGGCCCTCCAAGTCTCGGTCTGCAGCATGCCTACCCAAGTACACAGCTCGGGCAATCTTCGGTGGGTAGGGTTCAAGGGACTGGTGTTGGGACTTTCGGTGGTTACCCGTCGTATATGTGA | 1191 | 0.5424 | MAKTKKSKKQKLTKKTPKKIEKKLKSKKVEKALATKPSDSDSDSDSGFDKLQKLLEPYSKDQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETLLAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLASMGPSPPPQSQDTVGRKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSRGFALFVYKNQESARKALEDPYRIFEGHQLHCQKATEGKNKVPAQPQPQLAAVAATQNFMLSQHPTLNTLYSGLLAHPNASMIGAAAVNPAVAGAMNPGVISSSQVGSVIGSVEGLGGYGTHGVAGFGGTPSVLGPPSLGLQHAYPSTQLGQSSVGRVQGTGVGTFGGYPSYM* | 397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g1331 | 396 | Gene3D | - | 174 | 266 | IPR012677 | - | |
Vvi7g1331 | 396 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 192 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 267 | IPR035979 | GO:0003676 | |
Vvi7g1331 | 396 | Gene3D | - | 1 | 171 | IPR012677 | - | |
Vvi7g1331 | 396 | PANTHER | GEO13361P1-RELATED | 179 | 342 | - | - | |
Vvi7g1331 | 396 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 185 | 253 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 160 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 183 | 260 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vvi7g1331 | 396 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Vvi7g1331 | 396 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 175 | IPR035979 | GO:0003676 | |
Vvi7g1331 | 396 | SMART | rrm1_1 | 93 | 165 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | SMART | rrm1_1 | 184 | 256 | IPR000504 | GO:0003723 | |
Vvi7g1331 | 396 | MobiDBLite | consensus disorder prediction | 26 | 46 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi7g1331 | Vvi-Chr7 | 17383655 | 17389313 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi7g1331 | 178 | 269 | C2H2 Transcription Factor Family | AT2G19380 | 29.897 | 4.43e-08 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g1331 | K12741 | - | vvi:100266260 | 721.079 |