Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1330 ATGTCGGATCATGAGGATGTTTCTCCTCTCATCGCTCCTTCTCCGATGGCCGAACCCTCCGAGATCGACCTCGAAGCCGGTCAGGGAGAGCAAATCCAGTGCAGAATTTGCCTCGAAACCGATGGTAGGGATTTTATTGCTCCTTGCAAGTGTAAAGGGACATCCAAGTACGTTCACCGGGAATGTTTGGATCATTGGCGAGCTGTGAGGGAAGGGTTTGCATTTGCTCATTGCACAACCTGCAAGGCCCCTTATCATTTGAGAGTTCATGTTGTTGCTGATAGGAAATGGCGAACGTTGAAATTTCGGTTCTTTGTGACTAGAGACATTATATTTATATTTCTGGCAGTTCAGCTTGTAATTGCTTCATTTGCATATTTGGTGTACTTAATAGATGGTTTCCAGCAGTTCTGGCTTCGACTAGCATGGGGTTTTGACAGTGAAATTAGTTTCTACTACATATGTGGAGCACTGTTGTTTTTTGCTTTGCTGGGATTATCTGGGTGCTTCATAACTTGCTACGATCGAAGGGTGCGAAATGATCTGGCTCAGCCTTGTCGAGAGTTATGTCTTTGTTGCTGTCAGCCCGGAATGTGTGCAGACTGCCATTTACCAGGCACTCTTTGTATGTGGACTGACTGCACAACATGCTTTGAAAGTTGTGCAAGCACAGCAGGTGAATGCGGCTGCTTAGGAGGTGCTGGCGAGGCAGGCTTGCCATTGTTATTTATTATGGCTTTGATTGTACTAGGACTGTTTACTGTGATTGGCATATTCTACAGCGTATTGGTGGCTACAATGGTTGGACAACGCATTTGGCAGAGGCATTATCACATACTTGCAAAGAGGATGCTGACAAAAGAGTACGTTGTTGAGGATGTTGACGGTGAGATGACAGGGTCTGAGTGGTCACCCCCGCCTCTACCATCTGAGCATGTTCAGCAGCTGAAAGCACTTGGCCTCCTATGA 969 0.4644 MSDHEDVSPLIAPSPMAEPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASFAYLVYLIDGFQQFWLRLAWGFDSEISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFESCASTAGECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPPPLPSEHVQQLKALGLL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1330 322 SMART ringv_2 33 82 IPR011016 GO:0008270
Vvi7g1330 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Vvi7g1330 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Vvi7g1330 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
Vvi7g1330 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Vvi7g1330 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 321 - -
Vvi7g1330 322 SUPERFAMILY RING/U-box 30 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1330 Vvi-Chr7 17367793 17376018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1330 1 322 C3H Transcription Factor Family AT2G22120 84.877 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1330 - - vvi:100266317 660.603