Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1328 ATGGCTGCTCTCTCCCAATTCTTCTCCCACCTCTACACCATGACGATAGTCTTTTTCACTCTGCTCCTACTCGAAATAGTAATCCTCGTCCGGTCGGTGACCGGAATCGCCTGCAACCCCGACAAACGGCTGATAACGCGGAGCCAGTACCTGGATTTAATCGAAGAAAAGAGCCCAACGATTCGGTACAGGAGCGCAATAATGCAGGAGATGCTGGAATGCGCAGTGTGTTTGTCGAGGTTTGAAGATGGAGAGGAGATTAGGAAGCTTCAATGCAAGCATATATTTCATAAGGGGTGTTTGGATATGTGGTTGCAGCAAGACTGCCCGACATGCCCATTATGCAGAAGAAGGGTTTTGCCTGAGGAGATTGTTACCAAGTATCATCTGCAAAACCAGGTAGAGTATGATGGGAGTGATGAGGAGCTTATCTTCTTGTTATCTGCATTACATGGTAACAATTTATACAGATTCATGTAG 480 0.4625 MAALSQFFSHLYTMTIVFFTLLLLEIVILVRSVTGIACNPDKRLITRSQYLDLIEEKSPTIRYRSAIMQEMLECAVCLSRFEDGEEIRKLQCKHIFHKGCLDMWLQQDCPTCPLCRRRVLPEEIVTKYHLQNQVEYDGSDEELIFLLSALHGNNLYRFM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1328 159 Pfam Ring finger domain 73 116 IPR001841 -
Vvi7g1328 159 SMART ring_2 74 112 IPR001841 -
Vvi7g1328 159 SUPERFAMILY RING/U-box 56 122 - -
Vvi7g1328 159 PANTHER - 1 158 - -
Vvi7g1328 159 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Vvi7g1328 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1328 Vvi-Chr7 17354208 17354687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1328 73 127 C3H Transcription Factor Family AT1G15100 52.727 9.31e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1328 K16282 - vvi:104879925 326.635