Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1324 ATGGTGGCCGGAAAGAAGACCAAGAAGACTCATGAGAGCATCAACAACAGGCTTGCCCTCGTCATGAAGAGCGGCAAGTACACACTTGGGTACAAGACCGTGCTCAAATCTCTCAGAAGCTCGAAAGGAAAATTGATCCTCATTTCCAACAACTGTCCACCACTGAGGAAATCTGAGATCGAGTACTATGCCATGCTTGCAAAGGTTGGCGTTCACCACTTCAATGGAATAAGGAAGTTGGGGAATCAAACATCTGGTTGTAAAGACTAA 270 0.4593 MVAGKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLILISNNCPPLRKSEIEYYAMLAKVGVHHFNGIRKLGNQTSGCKD* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1324 89 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Vvi7g1324 89 SUPERFAMILY L30e-like 13 77 IPR029064 -
Vvi7g1324 89 Gene3D - 2 85 IPR029064 -
Vvi7g1324 89 PANTHER RIBOSOMAL PROTEIN L30 1 77 IPR039109 GO:0003723
Vvi7g1324 89 FunFam 60S ribosomal protein L30 2 86 - -
Vvi7g1324 89 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 81 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1324 Vvi-Chr7 17320747 17322434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1324 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 89.333 5.45e-45 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1324 K02908 - vvi:100256025 154.066