Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1319 ATGGAAAGAAATGGGGATGCAAAACTTCAAGATTCTGAGCCTCCAACTCCACATTCCATTATAAAGATGGGTTTGAGGGAGCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCTCAATGCATCGAACAGTTGCGGCAGAATTCTTCATCTTCACAAGAAAAAGAACATTCCCTGAAGCAGTTGCTGGAACTCATTAATACCCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCGGTTCCAGTGCTTGTTTCTCTTCTCCGATCAGGATCACTTGGAGTGAAGATGCAGGCTGCTAATGTTTTAGGCTCTCTCTGTAAAGAGAATGAATTAAGGGTAAAAGTCTTGCTTGGTGGTTGCATCCCTCCACTGCTTGGTCTCCTTAGGTCTAGCTCTGCAGAAGGTCAAATTGCAGCTGCAAAGACCATTTATGCTGTTTCTCAAGGTGGCACAAGGGACTATGTTGGATCAAAAATATTTTCTACTGAAGGAGTTGTCCCAGTGCTATGGAAGCAACTAGAAAATGGGCTGAAAGCTGGAAATTTGGTTGATAATTTATTGACTGGAGCTTTAAAAAACCTTTCCTGCAGCACTGAAGGATTTTGGGCTGCAACAGTACAAGCTGGGGGAGTGGATATACTTGTGAAGTTGCTTAAAACTGGACAGGCAAGCACTCAAGCAAATGTGTGCTTTCTTCTTGCATGTATGATGATGGAAGATGTATCTGTGTGTTCTAGGGTGTTGGCTGCAGAGGCTACAAAACAACTCCTCAAGCTATTAGCACCTGGTAATGAAGCTTCTGTGAGAGCAGAAGCTGCAGGTGCTCTTAAATCTCTTTCTGCTCAGAACAAAGAAGCAAGGCGGGAGATAGCTAATTTTGGTGGTATACCTGCTTTAATAAATGCTACAATTGCTCCATCAAAGGAATTCATGCAAGGTGAGCATGCCCAAGCATTGCAGGAGAATGCAATGTGTGCTCTTGCAAACATTTCTGGTGGTTTGTCATTTGTCATCTCAAGCCTTGGTCAAAGCCTTGAATCATGCGCTTCTCCTGCACAGACTGCTGATACATTGGGGGCTTTGGCGTCAGCTCTTATGATATACGATAGCAAAGCGGAATCTACTAGAGCATCAGATGCTGTGGTTATTGAGCAGACATTGATTAATCAGTTTAAACCTCACTTACCATTTCTTGTGCAAGAACGTACCATAGAAGCCCTAGCTAGTTTGTATGGAAATCCCATACTTTCAGATAAACTTGCAAATTCTGATGCAAAACGGCTGTTGGTAGGTCTGATCACAATGGCAGCCAATGAAGTTCAGGATGAGCTGGTAAGATCTCTTCTCATATTGTGCAACAATGGAGGCAGTCTATGGCGTTCACTTCAAGGTCGTGAGGGTGTTCAGCTGTTGATATCTCTTCTTGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCGTTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGCAAATGGGCTATCACTGCTGCTGGTGGCATACCTCCACTTGTACAAATTCTAGAGACAGGGTCTGCAAAAGCCAAGGAAGATTCTGCAACAATCCTTGGGAACCTCTGTAATCATAGCGAAGATATACGGGCATGTGTTGAAAGTGCTGATGCTGTCCCTGCTTTATTATGGCTTTTGAAGAATGGGAGCTCAAATGGGAAAGAAATTGCAGCAAAGACATTGAACCATTTAATCCATAAATCAGATACAGCTACTATTAGCCAACTCACTGCATTATTAACCAGTGATTTACCTGAATCCAAAGTTTATGTCTTGGATGCCCTAAAAAGTATGCTGTCCGTGGCTCCCATCCATGATATACTACATGAAGGCAGTGCTGCAAATGATGCAATTGAGACGATGATAAAAATATTGAGCTCCACCAGAGAAGAAACTCAGGCTAAGTCTGCATCATCTCTGGCTGGGATCTTTAACCTTAGGAAGGACTTGCGTGAAAGTAGCATTGCTATTAAGACTCTCTGGTCAGTCATGAAGCTGCTAAATGTTGAATCTGACAACATCTTAGTGGAGTCCTCTTGTTGTCTTGCCTCAATATTTCTTTCAATTAAAGAGAACCGGGATGTGGCTGCTGTTGCTAGAGATGCATTGTCCCCCTTAATCATTCTTGCTAATTCTGATGTTCTGGACGTTGCAGAGCAGGCAACATGCGCTTTGGCCAATCTTCTTTTGGATCATGAAGTTGCAGAGAAAGCTATTCCTGAAGAAATCATTGTTCCTGCTACCAGGGTTTTGCATGAAGGAACAGTTTCTGGGAAGGCCCATGCTGCAGCAGCAATTGCTCGCCTACTCCATTCTCGCCAAAGTGATTATGTATTAACTGATTGTGTGAACCGTGCTGGAACAGTTCTGGCATTAGTTTCTTTTCTGGAATCTGCTAGCAGTGGATCTTTTGCAACATCTGAGGCACTAGATGCACTTGCTTTTCTGTCAAGATCAGAAGGAGCTAGTGGGCCACTCAAACCTGCTTGGGCTGTTTTAGCTGAATTTCCAGACCGCATAACCCCAATTGTTTTTTGCATTGCTGATGCAGCACCCATGTTGCAGGATAAGGCTATTGAAATTTTATCACGGCTTTGCCGGGATCAACCTGTTGTTCTAGGAGATAAAATAGCTTGTGCCACTGGATGCATTTCATCCATTGCTATGAGGGTGATCAATTCGAGGAACATGAAGGTGAAAATTGGGGGAACAGCACTTCTTATCTGTGCTGCAAAAGTCAATCATCAGAGGGTGCTAGAAGATCTCAAACAATCAAGCTCAAACGGCCATCTTGTTCAATCTCTTGTTTCGATGCTTAAATCCCCTCAGTCTTATTCTTTAGGAGTCCAGGGGGATAATGAGAAGGATGCCATAAGCATTTACCGGCATCCTAAAGAAGAGGCCAGGAATGACGAACTTGAGAAAAGCACAACAGTTATTTATGGTGCCAACACAGCTACATGGCTACTCTCGGTTCTTGCTTGTCATGACGACAAAAGCAAAATTGCAATTATGGAGGCTGGAGCAGTTGAAGTCCTCACAGACAAAATTTCTCAATGTTTTCCGCTATATGCACAGATTGATTTTAAAGAAGATAGCAGCATATGGATTTGTGCTTTACTGCTAGCAATTTTGTTTCAAGATAGAGATATCATAAGGGCACCTGCAACCATGAAATCCATACCAGTACTTGCCAATTTGTTGAAATCGGAGGAGTCATCAAACAGATATTTTGCTGCCCAGGCAATGGCGAGTCTCGTCTGTAATGGTAGCAGGGGGACTCTTCTATCTGTTGCAAACTCTGGTGCAGCAGGTGGTCTTATTTCATTACTTGGCTGTGCGGATGTTGATATCTATGATCTCCTGGAATTGTCAGAAGAGTTTGCTTTGGTGCGTTATCCAGAGCAGGTTGCTCTTGAAAGGTTGTTTAGAGTTGATGACATTAGGGTTGGTGCTACTTCTCGTAAAGCAATACCTGCCCTTGTTGATCTACTCAAACCAATTCCAGATCGTCCAGGGGCCCCTTTTCTAGCGCTCGGACTTCTGATCCAGCTTGCAAAAGACTGTCCATCAAATAATATTGTAATGGTTGAATCAGGGGCTTTGGAAGCATTGACTAAGTACCTTTCACTTGGTCCACAAGATGCCACTGAGGAAGCCGCTACTGATTTATTGGGAATCCTATTTAGCAGTGCAGAAATACGAAGGCATGAATCTGCATTTGGTGCTGTCAGTCAACTTGTAGCGGTATTACGTCTAGGTGGAAGAGCTGCGAGGTATAGTGCTGCTAAAGCATTGGAAAGCCTATTTTCCTCTGACCATATTAGGAGTGCAGAAAGTGCCCGACAAGCTGTTCAACCTTTGGTGGAAATTCTTAATACTGGCTTGGAGAGGGAGCAGCATGCTGCTATTGCTGCATTGGTTAGGTTGTTGAGTGAAAATCCATCAAAAGCCCTTGCTGTCGGAGATGTTGAAATGAATGCAGTGGATGTCCTTTGCAGGATCCTTTCTTCAAATTGCTCAATGGATCTGAAGGGGGATGCTGCTGAGTTGTGTTATGTTCTTTTTGGAAATACGAGAATCAGGTCTACAATGGCTGCAGCTCGATGTGTCGAGCCTTTGGTTTCTCTCCTTGTGACGGAGTTCAGTCCCGCTCAGCATTCAGTTGTTCGTGCACTAGATAGGCTCTTGGATGATGAGCAACTGGCAGAACTAGTTGCTGCCCATGGTGCAGTTATTCCTCTTGTTGGCCTCCTCTATGGTAGGAATTACATGCTTCATGAGGCTGTTTCCAAAGCTCTTGTGAAGTTAGGAAAAGATAGGCCTGCTTGCAAGATGGAAATGGTAAAAGCTGGTGTGATTGAGAGTGTGCTTGATATTCTCCATGAAGCACCAGATTTTCTCAGTGATGCTTTTGCAGAATTGCTCCGAATATTGACCAACAATGCTACCATTGCCAAGGGTCCATCTGCAGCAAAAGTGGTTGAACCCCTTTTTCTGTTGCTAACCCGACCTGAATTTGTAACCCATGGACAGCAAAGCACATTACAGGTTCTTGTTAATATTTTAGAGCATCCACAGTGTCGTGCTGACTATACTTTGACCTCTCACCAAGCTATTGAACCACTTATCCCCTTGTTAGATTCTCCATCTCCAGGTGTGCAACAGTTGGCTGCTGAACTTCTATCACATCTACTCCTGGAAGAACACCTTCAGAAGGATTCAGTGACACAGCAAGTAATTGGTCCATTGATACGAGTTCTTGGTTCAGGTGCACCCATTTTGCAGCAGAGAGCTGTGAAGGCTCTTGTTAGTATCTCACTATCTTGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAGCTGTCCAAAGTGATATTGCAAGCTGATCCTTTGCTTCCTCATGCCTTGTGGGAGTCTGCCGCTTCTGTTTTAGCCAGTATTTTGCAATTCAGTTCTGAATATTATTTGGAAGTACCTGTGGCTGTATTGGTGAGGTTGCTTCGTTCTGGCTCTGAAACCACAGTAGTTGGTGCATTAAATGCTCTTCTGGTGTTGGAAAGTGATGATTCAACCAGTGCTGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTTTTGGAAATTCTCAGAAGTCATCAGTGTGAGGAAACTGCTGCCAGACTGCTGGAAGTATTACTGAACAATGTGAAGATCAGAGAATCAAAAGCTACTAAGTCTGCCATCTTACCATTATCTCAGTACCTTTTGGATCCTCAAACACAAGCTCAGCAGGCAAGATTACTGGCAACTCTGGCTCTTGGTGATTTATTCCAGAATGAGAGTCTTGCTCGAACAACAGATGCTGTTTCAGCTTGCCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTGGTCGCTATATGTGCTTTGCAAAACCTTGTAATGTGCAGTAGATCAAATAAAAGGGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTTCTGGATCTGATAGGTTCAAGTGATCCTGATACCTCAGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCCAACCACACTATTCAAGAGTATGCCTCAAGTGAAACAGTAAGAGCTATCACTGCTGCTATCGAAAAGGATTTATGGGCCACTGGAACTGTGAATGAGGAGTATCTGAAAGCCCTAAATGCACTGTTTGGCAACTTTCCACGGTTGAGAGCCACTGAGCCTGCAACACTTAGTATTCCCCATCTGGTAACATCTCTCAAAACTGGTTCGGAGGCAACGCAAGAAGCAGCATTGGATGCACTTTTTCTTCTCCGCCAAGCTTGGTCAGCATGCCCAGCTGAAGTCTCTAGAGCTCAATCAGTTGCTGCTGCAGATGCCATTCCCTTGCTGCAATACTTGATTCAGTCTGGCCCACCTCGATTTCAGGAGAAGGCTGAATTTCTTTTGCAGTGTTTGCCAGGGACATTATTAGTGACAATCAAGCGTGGCAACAATATGAAGCAGTCTGTGGGAAATCCAAGTGTCTTCTGCAAGCTTACACTTGCCAACACTCCAGCTAGGCAAACCAAGGTTGTATCAACGGGTCCTAATCCAGAGTGGGACGAGAGCTTTGCATGGACCTTCGAAAGTCCTCCAAAAGGCCAGAAGCTAAATATCTCTTGCAAGAACAAGAGCAAAATGGGAAAGAGCTCATTCGGAAAAGTAACAATCCAGATCGACCGGGTTGTCATGCTGGGAACTGTGGCGGGTGAGTACACTCTGTTGCCTGAAAGCAAAAGTGGGCCTTCCCGGAACCTGGAGATAGAATTCCAGTGGTCTAACAAGTAA 6396 0.4417 MERNGDAKLQDSEPPTPHSIIKMGLRERSSSMEDPDGTLASVAQCIEQLRQNSSSSQEKEHSLKQLLELINTRENAFSAVGSHSQAVPVLVSLLRSGSLGVKMQAANVLGSLCKENELRVKVLLGGCIPPLLGLLRSSSAEGQIAAAKTIYAVSQGGTRDYVGSKIFSTEGVVPVLWKQLENGLKAGNLVDNLLTGALKNLSCSTEGFWAATVQAGGVDILVKLLKTGQASTQANVCFLLACMMMEDVSVCSRVLAAEATKQLLKLLAPGNEASVRAEAAGALKSLSAQNKEARREIANFGGIPALINATIAPSKEFMQGEHAQALQENAMCALANISGGLSFVISSLGQSLESCASPAQTADTLGALASALMIYDSKAESTRASDAVVIEQTLINQFKPHLPFLVQERTIEALASLYGNPILSDKLANSDAKRLLVGLITMAANEVQDELVRSLLILCNNGGSLWRSLQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILGNLCNHSEDIRACVESADAVPALLWLLKNGSSNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVAPIHDILHEGSAANDAIETMIKILSSTREETQAKSASSLAGIFNLRKDLRESSIAIKTLWSVMKLLNVESDNILVESSCCLASIFLSIKENRDVAAVARDALSPLIILANSDVLDVAEQATCALANLLLDHEVAEKAIPEEIIVPATRVLHEGTVSGKAHAAAAIARLLHSRQSDYVLTDCVNRAGTVLALVSFLESASSGSFATSEALDALAFLSRSEGASGPLKPAWAVLAEFPDRITPIVFCIADAAPMLQDKAIEILSRLCRDQPVVLGDKIACATGCISSIAMRVINSRNMKVKIGGTALLICAAKVNHQRVLEDLKQSSSNGHLVQSLVSMLKSPQSYSLGVQGDNEKDAISIYRHPKEEARNDELEKSTTVIYGANTATWLLSVLACHDDKSKIAIMEAGAVEVLTDKISQCFPLYAQIDFKEDSSIWICALLLAILFQDRDIIRAPATMKSIPVLANLLKSEESSNRYFAAQAMASLVCNGSRGTLLSVANSGAAGGLISLLGCADVDIYDLLELSEEFALVRYPEQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLIQLAKDCPSNNIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVSQLVAVLRLGGRAARYSAAKALESLFSSDHIRSAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVGDVEMNAVDVLCRILSSNCSMDLKGDAAELCYVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQHSVVRALDRLLDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAVSKALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDFLSDAFAELLRILTNNATIAKGPSAAKVVEPLFLLLTRPEFVTHGQQSTLQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPSPGVQQLAAELLSHLLLEEHLQKDSVTQQVIGPLIRVLGSGAPILQQRAVKALVSISLSWPNEIAKEGGVVELSKVILQADPLLPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGSETTVVGALNALLVLESDDSTSAEAMAESGAIEALLEILRSHQCEETAARLLEVLLNNVKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTTDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMCSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFVKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNALFGNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLLVTIKRGNNMKQSVGNPSVFCKLTLANTPARQTKVVSTGPNPEWDESFAWTFESPPKGQKLNISCKNKSKMGKSSFGKVTIQIDRVVMLGTVAGEYTLLPESKSGPSRNLEIEFQWSNK* 2132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1319 2131 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 301 IPR000225 GO:0005515
Vvi7g1319 2131 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Vvi7g1319 2131 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1360 1594 - -
Vvi7g1319 2131 Gene3D C2 domain 2009 2131 IPR035892 -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 593 894 IPR016024 -
Vvi7g1319 2131 Pfam Armadillo/beta-catenin-like repeat 504 543 IPR000225 GO:0005515
Vvi7g1319 2131 Gene3D - 27 183 IPR011989 -
Vvi7g1319 2131 Gene3D - 1774 2008 IPR011989 -
Vvi7g1319 2131 Gene3D - 390 627 IPR011989 -
Vvi7g1319 2131 Gene3D - 1372 1678 IPR011989 -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 43 371 IPR016024 -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 321 658 IPR016024 -
Vvi7g1319 2131 SMART C2_3c 2011 2107 IPR000008 -
Vvi7g1319 2131 SMART arm_5 504 544 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1291 1332 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1794 1835 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1711 1749 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1419 1459 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1461 1501 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1546 1587 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1209 1250 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 115 155 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 712 750 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 546 586 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 72 114 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1378 1418 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 290 339 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 1837 1877 IPR000225 GO:0005515
Vvi7g1319 2131 SMART arm_5 247 288 IPR000225 GO:0005515
Vvi7g1319 2131 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 8 2131 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vvi7g1319 2131 FunFam Coatomer beta subunit 1596 2009 - -
Vvi7g1319 2131 Gene3D - 778 1150 IPR011989 -
Vvi7g1319 2131 Gene3D - 628 775 IPR011989 -
Vvi7g1319 2131 Gene3D - 1157 1371 IPR011989 -
Vvi7g1319 2131 Gene3D - 1681 1770 IPR011989 -
Vvi7g1319 2131 Gene3D - 190 373 IPR011989 -
Vvi7g1319 2131 Coils Coil 276 296 - -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 858 1136 IPR016024 -
Vvi7g1319 2131 MobiDBLite consensus disorder prediction 1 36 - -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 1166 1546 IPR016024 -
Vvi7g1319 2131 CDD C2 2012 2110 - -
Vvi7g1319 2131 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2009 2128 IPR035892 -
Vvi7g1319 2131 ProSiteProfiles C2 domain profile. 1991 2108 IPR000008 -
Vvi7g1319 2131 Pfam C2 domain 2010 2100 IPR000008 -
Vvi7g1319 2131 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2010 2131 - -
Vvi7g1319 2131 SUPERFAMILY ARM repeat 1560 2006 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1319 Vvi-Chr7 17276044 17287042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1319 477 599 U-box Gene Family AT2G23140 41.129 6.85e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1319 - - vvi:100264630 4002.98