Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1315 ATGGGTCGTGTTAAACTGCAGATTAAGAGAATAGAAAACAACACAAATCGACAAGTCACATTCTCTAAACGAAGAAATGGACTCATCAAAAAGGCTTATGAGCTCTCAGTCCTCTGCGATATCGATATCGCCCTCATTATGTTCTCACACTCCGGTCGTCTCAGCCATTTTTCCGGCAAGAGAAGAGTTGAAGATGTACTAACGCGATATATAAATCTCCCAGATCATGAGAGAGGAGGAATTCTGTTGAACGTGCAGTATTTGATCAGTACCCTTAAGAAGCTCAAGACAGAAAATGACATTGCTCTGCAACTTGCCAATCCTGTGGCTGTTAACTCTAACGTGGAGGAACTCAACCAAGAAATCAATAATTTACAGCATCAGCTCCAGATAGCAGAAGAACAATTAAGAATATTTGAGCCTGACCCACTGGCCTTTACCTCAACTGGGGAACTTGAATCTTGTGAGAAGAACCTGTTGGAGGCCTTGAATCGAGTCACAGAAAGAAAAAAATATCTACTGAGTAACCATTTATCTACTTACGACCCAGCAAGTATACAGGCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTTATGGGCTGGTTGCCGGAAAATGGACACAACCATACCCAAATGTTTGGATCTGACCCTTGTGTTCCTCTGAGGAACCATCCATCAACGAATGTCTACGATAATCTGGGCCATGGAACAAGTATCAATGTGGACCCAATCAACATGGGAGGATGCCACATCAGCAACTCGGGCTGTGAGGGCCTTCCACCGTGGCATCATTCATACACCTCAACTGAACTCCTCTCAGCCCTCATGCCTCAACCCTCATACCCTCCTCCTAAGCATGAGATGGCACCGGGTTCAATTATCCCAACAATGATGCCACATCAGCAAATGGAAGCCACGTCAAATTGCCAGCACTTGCCATCTGGTGAAGATGATTCAGCTTATGACAAAGCCCAACTGCCACAGCTTCACGTGGAATAA 1017 0.4494 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSHSGRLSHFSGKRRVEDVLTRYINLPDHERGGILLNVQYLISTLKKLKTENDIALQLANPVAVNSNVEELNQEINNLQHQLQIAEEQLRIFEPDPLAFTSTGELESCEKNLLEALNRVTERKKYLLSNHLSTYDPASIQAYLDSQEGLPTSFENEVMGWLPENGHNHTQMFGSDPCVPLRNHPSTNVYDNLGHGTSINVDPINMGGCHISNSGCEGLPPWHHSYTSTELLSALMPQPSYPPPKHEMAPGSIIPTMMPHQQMEATSNCQHLPSGEDDSAYDKAQLPQLHVE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1315 338 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vvi7g1315 338 Coils Coil 115 135 - -
Vvi7g1315 338 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vvi7g1315 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 206 - -
Vvi7g1315 338 MobiDBLite consensus disorder prediction 308 338 - -
Vvi7g1315 338 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vvi7g1315 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi7g1315 338 FunFam MADS-box transcription factor 41 13 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1315 Vvi-Chr7 17254062 17256929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1315 1 308 Type I MADS-box Gene Family AT1G22130 50.938 1.43e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi7g1315 SRF-TF 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1315 - - vvi:100254344 686.411