Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1297 ATGGTGAGTGAGAGAGAGAGTGAGATATGCCTCTCTAAGTTCTCCCAAACACTTCAAACAACCATGGCTGCTGCTTCACCAGTTGAGGCCTGCACAGCAGAAGAAATGCTGGACCCTGAGCAGAATGGCAGGGCTGAACGGGTGCAGTGGGTGCTGAATGCTCCTGAGCCACCAGGCCTGTGGCAAGAACTCATGGACTCAATAAGGGAAACTGCTTTCCCTCATGGAAACAATTTCCCATCTCTCCAAAAGCAGCCTACTACTCATGCCATTTCAGTCCTGCAGGGCATATTTCCTATCCTTCAATGGTGCAGAAACTACAAGGCAACCAAATTTAAGAAGGATTTAATGGCGGGTTTAACTCTTGCAAGCTTGTCCATTCCTCAGAGTATTGGATATGCAACTTTGGCCAAGCTTGATCCTCAATTCGGACTCTATACAAGTGCTATTCCACCACTCATTTATGCTTTAATGGGGACTTCAAGAGAGATAGCAATTGGACCAGTGGCTGTGGTTTCTCTGTTGATCTCTTCAATGGTTCCGAAACTTGAAGATCCTGTAGATAATCCAATTGCCTACAGAAAGCTTGTGTTTACTGCAACCTTTCTTGCAGGTATCTTTCAAGCTGCTTTTGCACTGCTAAGGCTGGGTTTTCTTGTGGATTTTCTTTCCCATGCTGCTCTGGTTGGGTTCATGGCGGGTGCAGCTGTTGTCATCGGTCTTCAACAACTGAAGGGACTGCTTGGGATCACTCACTTCACAAACAAAACTGATGTCATCTCTGTTCTGGAAGCTGTTTGGAGATCATTTCATCATACTTGGAGTCCCTACAATTTTATCCTCGGCTGCTCCTTCCTGAGCTTTATTCTAATTACCAGATTTGTGGGAAGAAGGAACAAGAAACTGTTCTGGTTGCCAGCCATTGCTCCTCTAGTGTCTGTTATTTTATCAACACTGATAGTTTTTCTCACAAGAGCTGATAAACATGGAGTTAAGGTAGTGAAACACATCAAGGGAGGCTTGAATCCAAGCTCAGTTCATCAGCTACAGTTCACTGGTCCACATACTGGAGAGATAGCCAAAATTGGGCTGATTGTGGCCATTATTGCACTTACAGAAGCCATTGCAGTTGGCCGGTCTTTTGCATCCATAAAAGGATACCATCTGGATGGAAACAAAGAAATGGTTGCTCTGGGCATCATGAACATTGCAGGATCTCTGACTTCTTGCTATGTTGCAACAGGTTCATTCTCACGCTCTGCGGTAAATTTCAGTGCTGGTTGTGAAACTGCCATTTCCAACATTGTGATGGCCATCACTGTGTTGATATCTTTGCAATTCTTCACAAAGCTCTTGTATTTCACTCCAACTGCAATCCTTGCTTCAATTATTCTTTCTGCTATTCCGGGACTCATTGACATCAGTGAAGCTTACAAAATATGGAAGGTGGACAAGTTGGATTTCCTAGCTTGCATTGGAGCATTCTTGGGGGTTCTGTTTGGTTCTGTGGAAATCGGTCTTCTTGTTGCGTTAACAATATCATTTGCAAAGATCATACTTAATGCAATTAGACCAGGCATTGAGACTCTGGGAAGACTTCCAGGAACCAATATGTTCTGTGATGTAGATCAATATCCCATGGCTATTACAAGCCCTGGAGTTCTGATCGTCCGTGTCAAGTCTGCCCTCCTTTGTTTCGCAAATGCCAATTTTGTTAGAGAAAGGATTATGATGTGGGTGACTGAGGAAGCAGAGGACAATAAGGGAAGTGCAAAAGGGAGGAATCAACTGGTAGTTCTTGACATGTCCAACTTGATGAACATCGACACCTCGGGAATTGCTTCTCTGGAGGAGGTGCATAAGCAACTGGTCTCACAAGGAATGGAGCTAGCCATAGCCAACCCCAGGTGGCAAGTGATTCACAAGCTAAAGCTAGCAAAGTTTGTGAACAAAATTGGAGGAAGGGTCTTCTTGTCTGTTGCAGAAGCTGTGGATGAATGCTCCACCATCAAGATTATGACTACTATTTAG 2031 0.4431 MVSERESEICLSKFSQTLQTTMAAASPVEACTAEEMLDPEQNGRAERVQWVLNAPEPPGLWQELMDSIRETAFPHGNNFPSLQKQPTTHAISVLQGIFPILQWCRNYKATKFKKDLMAGLTLASLSIPQSIGYATLAKLDPQFGLYTSAIPPLIYALMGTSREIAIGPVAVVSLLISSMVPKLEDPVDNPIAYRKLVFTATFLAGIFQAAFALLRLGFLVDFLSHAALVGFMAGAAVVIGLQQLKGLLGITHFTNKTDVISVLEAVWRSFHHTWSPYNFILGCSFLSFILITRFVGRRNKKLFWLPAIAPLVSVILSTLIVFLTRADKHGVKVVKHIKGGLNPSSVHQLQFTGPHTGEIAKIGLIVAIIALTEAIAVGRSFASIKGYHLDGNKEMVALGIMNIAGSLTSCYVATGSFSRSAVNFSAGCETAISNIVMAITVLISLQFFTKLLYFTPTAILASIILSAIPGLIDISEAYKIWKVDKLDFLACIGAFLGVLFGSVEIGLLVALTISFAKIILNAIRPGIETLGRLPGTNMFCDVDQYPMAITSPGVLIVRVKSALLCFANANFVRERIMMWVTEEAEDNKGSAKGRNQLVVLDMSNLMNIDTSGIASLEEVHKQLVSQGMELAIANPRWQVIHKLKLAKFVNKIGGRVFLSVAEAVDECSTIKIMTTI* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1297 676 ProSitePatterns SLC26A transporters signature. 141 162 IPR018045 GO:0008271|GO:0008272
Vvi7g1297 676 Pfam STAS domain 545 663 IPR002645 -
Vvi7g1297 676 PANTHER SULFATE TRANSPORTER 66 667 IPR001902 GO:0016020|GO:0055085
Vvi7g1297 676 ProSiteProfiles STAS domain profile. 564 667 IPR002645 -
Vvi7g1297 676 Gene3D STAS domain 524 670 IPR036513 -
Vvi7g1297 676 SUPERFAMILY SpoIIaa-like 550 667 IPR036513 -
Vvi7g1297 676 FunFam Sulfate transporter 31 524 670 - -
Vvi7g1297 676 NCBIfam sulfate permease 99 662 IPR001902 GO:0016020|GO:0055085
Vvi7g1297 676 Pfam Sulfate permease family 112 492 IPR011547 GO:0016020
Vvi7g1297 676 CDD STAS_SulP_like_sulfate_transporter 545 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1297 Vvi-Chr7 17132805 17136150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1297 2 672 Inorganic Solute Cotransporters AT5G10180 66.862 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1297 K17469 - vvi:100257574 1291.17