Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1274 ATGGGCGTGGATCAAAATGTTGTTAAGCAGGAAGTGGAGGATGAAGTGTTCAGAATGGCGTCGTCTCGGGAGAGCCGAAGGTCCAGGGAAGAAGACGTGACTCTGGCTCAATTGTCCCAGACTGTGCGGACCTTCGCTCCCTCCACGCCGCAGTCACTAACAAAGATCAAGCTCAAGTCTTCTACTCGGACTAAACAGAAAAAGTGTGTAGAGAAAAAAGAGAAGGGTTTTGGGATCAAGAGGAGGCGTTCGACTTTCAAATTGAAGCACGAGGCATCTGATCATTCACCAAAGTCTGCAAGCCGTAAACGAAATAAGGCTGCAGTTGATGGCTCATGTACTCCTCTTAAAGCTAAGACATCTGCTCTGATTCGAGCAGAGGAGGTTCAGTCAAATCTGGGCCCTGAATTCCCTAGCTTTGTGAAAGTTTTGGTCAGATCACATGTGTCTAGTTGTTTTTGGATGGGGCTTCCTGGGCCATTCTGTGATATGCACCTACCAAAAAAGGATGTTATCATTACTTTGGAAGATGAAAGTGGGGCAGCATGTCAGATTAAATATATCGCAGACAAGACGGGACTAAGTGCTGGGTGGAGACGGTTTTCCATGGATCACAAGTTGCTTGAGGGAGATGTTTTGGTCTTCCATTTAGTTGAGCCAACCTCATTTAAGGTGTATATAATAAGGGCTAATGATTTGACTGAAGTCGATGGTGCTCTTGGCCTTCTAGAACTGGACACTCATACAAAAAATGATGCTGGCAAGCTGGTTGCAGTCTCTGATCTGGATACAGTTGCTTGTAAAAGTTCAAAGAGGAAGCATTCAAAATCTCTTCCACTGGTTGTTTTCCAAAAGAAGAATAGGAAGACAGGATCAATTCCTAACCTTATGCAGAGAGAACAATCTGAAAATGACAGTGAAGGGAATGGTTCAGAAGTTTTGGAAGGTTCCAAATTCTTTGAGCCTGCAGTTCAATTCAAAGACATAAGTTTTGATAATTTCAACATTTTGGTGGATGGGCTGCTTATTGATTCTGAGCTCCCAGAAGATACTAGAGCGAAGTACTATGAGCTTTGCTGCAGTCAGAATGCATTTCTTCATGAGAAAATTGTCGAGGGCTTAAATTGTAGGTTGATTGCTGAAATTATTTCTCAGACAGTTCAGATTGCTGATGCCCTGAGAGCTTGCAAGCTTACTACTTCTCGGGTTGAGTTTACAAATTGGGAGAGGACTTTGAAAGCCTTTGAGGTTCTGGGCATGAACGTTGGATTTTTACAAGCTCGACTGGACCATCTTGTGAGCCTTGCCTTTGACTCAGAAGGTGCCATGTACTCGAGGCAGTACATGGAGGTCACAATCGAACGAGCTCATGCAGAAGATGAGATGAGAGATCTCGAAGATAAGCTTATGGAACTAAAAGCAGCATCTGAAAGGATGGATGCTGATATAGAGACTCTGAAGGAAGCAGTTGAGAACCATGTAATCAGGTTCCAAGAAGAGATTGTCGCACCCTGGTAA 1518 0.4387 MGVDQNVVKQEVEDEVFRMASSRESRRSREEDVTLAQLSQTVRTFAPSTPQSLTKIKLKSSTRTKQKKCVEKKEKGFGIKRRRSTFKLKHEASDHSPKSASRKRNKAAVDGSCTPLKAKTSALIRAEEVQSNLGPEFPSFVKVLVRSHVSSCFWMGLPGPFCDMHLPKKDVIITLEDESGAACQIKYIADKTGLSAGWRRFSMDHKLLEGDVLVFHLVEPTSFKVYIIRANDLTEVDGALGLLELDTHTKNDAGKLVAVSDLDTVACKSSKRKHSKSLPLVVFQKKNRKTGSIPNLMQREQSENDSEGNGSEVLEGSKFFEPAVQFKDISFDNFNILVDGLLIDSELPEDTRAKYYELCCSQNAFLHEKIVEGLNCRLIAEIISQTVQIADALRACKLTTSRVEFTNWERTLKAFEVLGMNVGFLQARLDHLVSLAFDSEGAMYSRQYMEVTIERAHAEDEMRDLEDKLMELKAASERMDADIETLKEAVENHVIRFQEEIVAPW* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1274 505 Coils Coil 448 492 - -
Vvi7g1274 505 MobiDBLite consensus disorder prediction 86 110 - -
Vvi7g1274 505 Pfam B3 DNA binding domain 140 230 IPR003340 GO:0003677
Vvi7g1274 505 MobiDBLite consensus disorder prediction 293 311 - -
Vvi7g1274 505 Gene3D - 117 234 IPR015300 -
Vvi7g1274 505 SUPERFAMILY DNA-binding pseudobarrel domain 134 231 IPR015300 -
Vvi7g1274 505 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Vvi7g1274 505 MobiDBLite consensus disorder prediction 87 105 - -
Vvi7g1274 505 SMART B3_2 140 231 IPR003340 GO:0003677
Vvi7g1274 505 CDD B3_DNA 138 229 IPR003340 GO:0003677
Vvi7g1274 505 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 231 IPR044837 -
Vvi7g1274 505 MobiDBLite consensus disorder prediction 293 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1274 Vvi-Chr7 16919770 16924273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1274 118 297 B3 DNA Binding Superfamily AT3G19184 42.222 4.84e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi7g1274 B3 2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1274 - - vvi:100264623 973.385