Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1268 ATGCGGATGTTCGGAGACGGAATGAAGATAGTGGAGTCCACTGCTTGGCCGGGTTTGAATAAGGACGTGGAGTTCGCCGTCATGGTCTCCACTCTCCAGAATGTCATCACCGGAAACATTGAACCTCTACAAAATGATACCTTCACCACCCACCACAGTAATGATCTGACCGTGCTGGCTCTGCCGGATCCTGAGAAGTGTCAGGAATGCGGTTTCGACGGCTGTCTCGGGTGCAATTTCTTTGCCCCACCGGACGAGAGAGGGAAGAAGAGGACTAGAAAGAGGAAGTACAGGGGAGTTCGACACAGGCCCTGGGGAAAATGGGCGGCAGAAATTCGAGACCCGCAAAAAGCGGTGCGCTTGTGGCTGGGCACCTTCGACAACGCCGAGGCAGCCGCCCGAGCTTACGACAGGAAAGCCATTGAGTTCCGCGGAATTAAAGCCAAGCTCAACTTTCCACTATCCGACTACACAAACGAAACAGAATCAAGCAACATTATGGGAGTTAGAGTTAAGCCCACTACGTCGGATCTCGGAGAGAGTCGAAAATTGAAGAGTAAAGAGAAATTGCATGACGCGGTAGATGAGAGCGAACTGAGCAAGAAGAAGACTGCGGTAGCAGGGGAGGCCAGTAGAGTAAGAGAATAG 648 0.5201 MRMFGDGMKIVESTAWPGLNKDVEFAVMVSTLQNVITGNIEPLQNDTFTTHHSNDLTVLALPDPEKCQECGFDGCLGCNFFAPPDERGKKRTRKRKYRGVRHRPWGKWAAEIRDPQKAVRLWLGTFDNAEAAARAYDRKAIEFRGIKAKLNFPLSDYTNETESSNIMGVRVKPTTSDLGESRKLKSKEKLHDAVDESELSKKKTAVAGEASRVRE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1268 215 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 MobiDBLite consensus disorder prediction 175 215 - -
Vvi7g1268 215 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Vvi7g1268 215 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Vvi7g1268 215 PANTHER DNA-BINDING DOMAIN 86 189 IPR044808 GO:0003700|GO:0009873
Vvi7g1268 215 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Vvi7g1268 215 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 CDD AP2 100 155 IPR001471 GO:0003700|GO:0006355
Vvi7g1268 215 MobiDBLite consensus disorder prediction 176 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1268 Vvi-Chr7 16889343 16889990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1268 19 163 AP2-EREBP Transcription Factor Family AT4G34410 43.169 4.11e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi7g1268 AP2 4.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1268 - - vvi:104879921 420.624