Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1267 ATGAATACGGAAGAGGAGTCAGCAATCATTGTGTCCACACTCCGTAACGTCATCGCCGGTACCACCGAGCATCCAGAAAATGTCATGTCAGCTTCTACGTCCACCACCACCACCACCACCCACACCCAGCAAACTCAGACCCTGTTGTCACTCCCTCCTCCTGAAAAGTGTCCGCACTGCGACTACGACGGATGTATTGGGTGTAACCTTTTTGTTGGGCCGGGTGAAACGGAGGATGCTAGGGGGAAGGTCAAGTTCAGAGGTGTTCGACAGAGACCCTGGGGAAAATGGGCGGCGGAGATTCGAGACCCACGCCGGGGCATGCGGGTGTGGTTGGGCACATTCGACACTGCAGAGGCCGCTGCTAGAGCTTATGATAGAAAATCCTATGAATTCCGAGGAATTAGAGCCAGGCTCAACTTCCCTTTATCCGACTATAAAAATGAGAAAAAATCAAACAACATTAGTGAGGAAGGTGAGCCCAGTGCATCGGACACAGCGGAGAAGAAAAAATTGGAGAATATGAACGCTGAGACCAGTTCAAAAGAACTTCGAGAGTAG 561 0.5098 MNTEEESAIIVSTLRNVIAGTTEHPENVMSASTSTTTTTTHTQQTQTLLSLPPPEKCPHCDYDGCIGCNLFVGPGETEDARGKVKFRGVRQRPWGKWAAEIRDPRRGMRVWLGTFDTAEAAARAYDRKSYEFRGIRARLNFPLSDYKNEKKSNNISEEGEPSASDTAEKKKLENMNAETSSKELRE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1267 186 MobiDBLite consensus disorder prediction 150 186 - -
Vvi7g1267 186 FunFam Ethylene-responsive transcription factor 2 85 143 - -
Vvi7g1267 186 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Vvi7g1267 186 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 Coils Coil 167 186 - -
Vvi7g1267 186 Pfam AP2 domain 85 130 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Vvi7g1267 186 PANTHER DNA-BINDING DOMAIN 44 175 IPR044808 GO:0003700|GO:0009873
Vvi7g1267 186 MobiDBLite consensus disorder prediction 146 186 - -
Vvi7g1267 186 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1267 Vvi-Chr7 16884714 16885274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1267 1 152 AP2-EREBP Transcription Factor Family AT4G34410 38.503 2.35e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g1267 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1267 - - vvi:104879942 361.303