Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1266 ATGAGCGACTGTGGAGACAGAATTCAGAGAGTGAAGGTGAATAAGGAAGAGGAGTTCTCAATCATGGTCTCCACCCTCTGTAACGTCATTGCCGGAGCCACTGAACCTCGAGAAAATGCCACGTCATCGTCCACGTTCACCACCACCCAGCAAACTGATCAGGTACTGTTGTATCTCCCTGCTCCTGAAAAGTGTCCGCACTGCGACTACGAAGGCTGTCTTGGCTGCAATCTTTTTGTGCCTTCAGGTGAAGCAGAGGAGAGGACGAGGAAGGGCAAGTTCAGAGGAGTTCGACAGAGACCCTGGGGAAAATGGGCGGCAGAGATTCGAGACCCGCGGCGAGCTGTGCGACTGTGGCTGGGCACGTTCGACACGGGGGAAGCCGCCGCTCGAGCTTACGATAGAAAAGCCATTGAATTGCGAGGAATTAGAGCTAAGCTCAACTTCCCACTTTCCGACTATAAAAATGAACAAAAATCAATCACCATTAATGAGGAAGATGAACCCAGTGCATCGGATAATACAAAGAAAGAAAGATTGAAGGGTGTAGCAGTGGAGACCGGTGTGAAAGAGCTTGGAGAGTTGACGGAGGAGGACCCGAGTTTACACCCATGA 615 0.5089 MSDCGDRIQRVKVNKEEEFSIMVSTLCNVIAGATEPRENATSSSTFTTTQQTDQVLLYLPAPEKCPHCDYEGCLGCNLFVPSGEAEERTRKGKFRGVRQRPWGKWAAEIRDPRRAVRLWLGTFDTGEAAARAYDRKAIELRGIRAKLNFPLSDYKNEQKSITINEEDEPSASDNTKKERLKGVAVETGVKELGELTEEDPSLHP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1266 204 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 FunFam Ethylene-responsive transcription factor 2 93 151 - -
Vvi7g1266 204 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 CDD AP2 93 152 IPR001471 GO:0003700|GO:0006355
Vvi7g1266 204 PANTHER DNA-BINDING DOMAIN 52 168 IPR044808 GO:0003700|GO:0009873
Vvi7g1266 204 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Vvi7g1266 204 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677
Vvi7g1266 204 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1266 Vvi-Chr7 16873484 16874098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1266 7 160 AP2-EREBP Transcription Factor Family AT4G34410 39.378 7.39e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g1266 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1266 - - vri:117919439 394.815