Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1262 ATGGCACAAAGATCGGTTCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCGAGCACCGACGACGTGATCTCCTGGAGCGAAAGCGGCAACACCTTCGTGGTTTGGAAAACTGCGGACTTCGCTAAGGATTTGCTTCCTAATTACTTCAAGCACAACAATTTCTCAAGCTTCGTCCGCCAGCTCAATACATATGGCTTTAGAAAGATTGTGCCCGACAAATGGGAGTTCGCGAACGAGTATTTCAAGCGAGGGCAAAGAGAGCTTATGTCCGAAATTCGGCGCCGCAAAACGACCACTTCGTCGACGGCGCAGGCCCTGCCAGGTGGAAAATCCGCCGGGGGTGGAACGTCGTCTCCGACGAACTCCGGGGAGGATCTGGGGTCGACTTCGACGTCGTCTCCGGACTCGAAAAACCCCGGGTCTGTGGAGACTACGACGACGGCGCAGTTCGCTGATTTATCGGACGAGAACGAGAAACTGAAAAAGGATAATGAGAGTCTGAGCACAGAGCTGGCGCAGACGAAGAGGCAGTGCGAGGAGCTGATAGCGTTTTTGACTGAGTACGTGAAGGTGGCACCCGATCAGATCAATCGCATCATGAAGCAAGAAAGCTGTGGGTCCGGCCATGGTGGGTTGGTTGGTGAAATTGGAGGCTCTGTTGATGACGACGACGACGATGAAAAAGACGAGGACCCCAATGAGGAGAGTTTGAAACTGTTTGGGGTTTGGCTGAAGGGAAAGAAGAAAAGGGGACGAGAGGAGAAAATGGGGTACGGTGGGCCACACCAGAAGGAGATGAAGACTGTGGACTTTGAGGCGCCGTGGATGACCAGCAAGGTCTGCAACTGA 861 0.5366 MAQRSVPAPFLTKTYQLVDDPSTDDVISWSESGNTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQRELMSEIRRRKTTTSSTAQALPGGKSAGGGTSSPTNSGEDLGSTSTSSPDSKNPGSVETTTTAQFADLSDENEKLKKDNESLSTELAQTKRQCEELIAFLTEYVKVAPDQINRIMKQESCGSGHGGLVGEIGGSVDDDDDDEKDEDPNEESLKLFGVWLKGKKKRGREEKMGYGGPHQKEMKTVDFEAPWMTSKVCN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1262 286 MobiDBLite consensus disorder prediction 222 236 - -
Vvi7g1262 286 Gene3D - 2 101 IPR036388 -
Vvi7g1262 286 MobiDBLite consensus disorder prediction 96 170 - -
Vvi7g1262 286 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 MobiDBLite consensus disorder prediction 212 240 - -
Vvi7g1262 286 MobiDBLite consensus disorder prediction 99 157 - -
Vvi7g1262 286 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi7g1262 286 Coils Coil 154 181 - -
Vvi7g1262 286 Gene3D - 146 196 - -
Vvi7g1262 286 FunFam Heat stress transcription factor B-4 2 100 - -
Vvi7g1262 286 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 227 IPR027725 -
Vvi7g1262 286 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1262 Vvi-Chr7 16842801 16844810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1262 2 286 HSF AT4G36990 54.636 9.98e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi7g1262 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1262 K09419 - vvi:100247320 560.451