Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g1255 | ATGGATAACAAGCTTGTGGTTTTGGGAATCCCATGGGATGTGGATACGGATGGGTTGAGGGATTATATGAGCAAATTTGGAGAATTGAAGGACGTTATTGTGATGAAGGAGCGATCCACTGGCCGATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAGAAAGTATTATCAAGTGAGCATTTTCTTGGAAACAGAATGTTGGAAGTGAAAGTGGCAACACCTAAGGAGGAGATGATGCGAGCTCCCATTAAGAAGGTCACCAGGATATTTGTGGCTAGGATCCCGGACTCTGTGAATGAGGCTGCCTTCCGAAGTTATTTTGAGACATATGGTGAAATAACGGATTTGTACATGCCAAAGGATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGAATCTGTGGACAATTTGATGGTTGAAACTCATGAACTGGGAGGGTCTGCTGTAGTTGTTGATCGAGCAACCCCCAAGGAGGAGGAGTTCAGGCCAGTAAGCAGAGTGCCTCAGGGTGGATATGGTGCATACAATGCTTATATCACTGCAGCAACTAGATATGCTGCACTAGGTGCTCCTACCTTGTATGACCATCCAGGCTCAGTTTATGGAAGAGGGGAATCTACTCGTGCAATGGGCAAAAAGATTTTTGTTGGAAGGCTTCCTCAGGAAGCAAGCGCCGAAGATCTTCGTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAGATGGTGTAGCTGATCGTGTATCTCGAAGGTCTCATGAGATTTGCGGACAGCAGGTTGCAATTGATTCGGCTACACCACTTGATGATGCTGGTAGCAGTGGAAATTTCATGATGGATAGTGCTGAACCATTTGGTGGTTTTGGTGGTCCTATGCGCACCTATGGAAGGATGTACGGAAGCCTGGATTTTGATGATTGGGGTTATGGCATCGGTGGAGGGAGACCTTCAAGGGCAGATTGGAGGTATAGACCATACTAG | 1080 | 0.4546 | MDNKLVVLGIPWDVDTDGLRDYMSKFGELKDVIVMKERSTGRSRGFGYVTFGSVEDAKKVLSSEHFLGNRMLEVKVATPKEEMMRAPIKKVTRIFVARIPDSVNEAAFRSYFETYGEITDLYMPKDHGSKGHRGIGFITFASAESVDNLMVETHELGGSAVVVDRATPKEEEFRPVSRVPQGGYGAYNAYITAATRYAALGAPTLYDHPGSVYGRGESTRAMGKKIFVGRLPQEASAEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGSSGNFMMDSAEPFGGFGGPMRTYGRMYGSLDFDDWGYGIGGGRPSRADWRYRPY* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1255 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 88 | 186 | IPR035979 | GO:0003676 | |
| Vvi7g1255 | 359 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 222 | 307 | - | - | |
| Vvi7g1255 | 359 | Gene3D | - | 88 | 173 | IPR012677 | - | |
| Vvi7g1255 | 359 | FunFam | RNA-binding family protein isoform 1 | 221 | 304 | - | - | |
| Vvi7g1255 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 83 | 176 | - | - | |
| Vvi7g1255 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 168 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 79 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 86 | IPR035979 | GO:0003676 | |
| Vvi7g1255 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 300 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | Gene3D | - | 2 | 84 | IPR012677 | - | |
| Vvi7g1255 | 359 | SMART | rrm1_1 | 225 | 296 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | SMART | rrm1_1 | 4 | 75 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | SMART | rrm1_1 | 93 | 164 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 1 | 82 | - | - | |
| Vvi7g1255 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 224 | 322 | IPR035979 | GO:0003676 | |
| Vvi7g1255 | 359 | Gene3D | - | 216 | 303 | IPR012677 | - | |
| Vvi7g1255 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 226 | 280 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5 | 63 | IPR000504 | GO:0003723 | |
| Vvi7g1255 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 148 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi7g1255 | Vvi-Chr7 | 16780459 | 16789298 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1255 | 5 | 283 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 21.404 | 2.07e-11 | 63.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g1255 | K14411 | - | vvi:100247389 | 734.561 |