Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1250 ATGGATATTGATGTGCTAAAATCGACAGTACAAGATCAGATGGACATGATGTCAATGATGATGCAAATGGACAAGCTTCCTGAACTCTTTGGACCCTACCAGGAGCCTTCCGAATTGCCGGAGATGGAATTCTCCGGCGGTGCAACTGCCACCACCATAGGAACTGCACCGCCCATGTTCCATAGCCCTCTCATAAATCCATCTTCCTCCATATCGTTTATGAGCACCCCAGTCCAAGAACCCATGACACCACCTCTTCTTCCCCATGTGGGCTCTGGGAGATTGAAAAGTGCCGGTGAATTATGCGGTGTAAATCCATTTTCACCTCCCTCAGAGAAGAAAAACTCCATGGCAGCAATGAGAGAGATGATATTCTCAATTGCCGTGATGCAGCCCATTCACATAGACCCCGAGTCTGTCAAGCCACCCAAGAGGAGGAACGTGAAGATATCCAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGGAGGGAAAGGATCAGCGAGAGGATAAGGATTCTGCAGAGACTAGTACCAGGAGGAACCAAAATGGATACAGCCTCAATGTTGGATGAGGCTATTCATTATGTGAAGTTTCTGAAGAACCAGGTACAATCACTGGAAAGGGCAGGAGCCCATAGGCCAATGGGTGTTGTTGGGTTCCCAGCAACCACAACCTCAATGGCCAATCCCAATTACTCATCTTTGGCCAAAGCTTTCCAGACTTCTCCGATGGTGGGCTCTATGCAGATGTTTAGGTGA 759 0.4914 MDIDVLKSTVQDQMDMMSMMMQMDKLPELFGPYQEPSELPEMEFSGGATATTIGTAPPMFHSPLINPSSSISFMSTPVQEPMTPPLLPHVGSGRLKSAGELCGVNPFSPPSEKKNSMAAMREMIFSIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERAGAHRPMGVVGFPATTTSMANPNYSSLAKAFQTSPMVGSMQMFR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1250 252 Gene3D - 149 214 IPR036638 GO:0046983
Vvi7g1250 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 100 240 IPR045843 GO:0003700|GO:0006355
Vvi7g1250 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Vvi7g1250 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
Vvi7g1250 252 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Vvi7g1250 252 Coils Coil 189 209 - -
Vvi7g1250 252 SMART finulus 156 205 IPR011598 GO:0046983
Vvi7g1250 252 FunFam BHLH transcription factor 153 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1250 Vvi-Chr7 16738987 16739745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1250 117 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 95.604 4.06e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1250 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1250 - - vvi:100254182 467.618