Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1248 ATGACGTGGGTTCGCGGCGGCACCATCGGCCGTGGGAGTTTCGCCACCGTCAGTTTGGCCGTTTCGAGGGCCGGGGAAGATCGGTTTCCTCCATTGATGGCTGTGAAGTCTTGTGGGGTTGAGGACTCTGCTACACTTAGGAACGAGACACAAGTGTTGAGTCGACTTGGGGATTGCCAGGAGGTTCTCCGATGTTATGGCGATGAGTATAGCTGTGAGGGCGGTAGAGAGTTGTACAACGTGTTGTTGGAGTACGCTGCTGGTGGGAGTTTGGCCGATTATGTCAGGGATTTTGGTGCTTTGGTTGAATCCGATGTTAAGAGATATACAAGGTCGATTCTTAGAGGGCTTGATTACATTCATGGAGTTGGGTTTGTTCACTGCGATGTCAAGCTTCAAAACCTACTCCTCTGTTCTTCGAATGACTCTGTTTTCTGCGCCAAGATTGGAGATTTTGGGCTCGCGAAGAAGGCTGAGAAAGTTGCAGAGAAGAAGGGGTTCAGGGGTACGCCTATGTACATGGCGCCGGAGTGTCTGTCCGGGGAGGAGCATAGCGCTGCGGCCGATATTTGGGCTCTAGGATGTGCGGTGGTGGAGATGGCGAGTGGGAAGCCAGCGTGGCAGTGCCAGCCGGGGACTGACGCGAATGCGTTGTTGTTTAGGATTTGGGGCGGGAAAGCGTCGCCGGAGACTCCATCGGAGTTGTCTGAGGAGGGAAAAGATTTTCTTGAAAAGTGTTTCTTGCGTGATCCGAGAAAGAGATGGACGGCGGAGATGCTTCTTGATCATCCGTTCGTCGCCGGTACCGACGTGACTGTTCCATTGAAACAGTCCGACGAAGCCTCCACTTCCCCAAGAAGTCCTTTCGATTTTCCGGAATGGGCCTCCGATCACACCCCTTCACCGACGCCGGATTCTGAGGCCTGCTTCGACAGAGACCTCAATTCATGGCTCAATTCATCATCTCACTCCTGGACATCTCCCGCGGACCGAATCCGGCAACTGGTGACCGATCAGACGCCCAATTGGTCCGTTTCGGAGAGTTGGTTCGCCGTCAGAAATAATTTTTGGATAAGATTTGTTATATTTTATTTTTATTCTTGTTATTGA 1110 0.5207 MTWVRGGTIGRGSFATVSLAVSRAGEDRFPPLMAVKSCGVEDSATLRNETQVLSRLGDCQEVLRCYGDEYSCEGGRELYNVLLEYAAGGSLADYVRDFGALVESDVKRYTRSILRGLDYIHGVGFVHCDVKLQNLLLCSSNDSVFCAKIGDFGLAKKAEKVAEKKGFRGTPMYMAPECLSGEEHSAAADIWALGCAVVEMASGKPAWQCQPGTDANALLFRIWGGKASPETPSELSEEGKDFLEKCFLRDPRKRWTAEMLLDHPFVAGTDVTVPLKQSDEASTSPRSPFDFPEWASDHTPSPTPDSEACFDRDLNSWLNSSSHSWTSPADRIRQLVTDQTPNWSVSESWFAVRNNFWIRFVIFYFYSCY* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1248 369 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Vvi7g1248 369 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 311 - -
Vvi7g1248 369 SMART serkin_6 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1248 369 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Vvi7g1248 369 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vvi7g1248 369 CDD STKc_MAPKKK 3 266 - -
Vvi7g1248 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vvi7g1248 369 Pfam Protein kinase domain 6 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1248 369 MobiDBLite consensus disorder prediction 277 305 - -
Vvi7g1248 369 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1248 Vvi-Chr7 16722078 16724954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1248 1 353 MAP Kinase Kinase Kinase AT4G36950 51.389 3.43e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi7g1248 Pkinase 4.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1248 - - vvi:100259363 711.449