Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1243 ATGTCCGATCACAGAACTACGCTCATGAACGATCAGCTCTCCAAACCCACTTCCATATTTGGTCTTCGCTTGTGGGTGGTTTTGGGTGTTTGTGTCGGAGCTGCCTTTGTGCTTCTTCTCTTCCTAATCTCGCTCTGGCTCACATCAAAACGGAACAACTCTTCCAAAATCAGGCCGTCTCAGAAGCCCACGATCCCAGCTGTGTCCAAAGAGATCCAGGAAATCAGAATTGACCATGGCCACCGAAGCCAGATTCAGGCCGACCCATTTCCCGAATCGGATCAATTGGCCGGAATAGAAGGGCAGGCATTGCTTCTTCCACCGGGAGAGGAAAGTCCAGGTGGGGTTCACAGGATTCACATCGAGCTTGGAAAGGACCATAGAATTTCTTACCCCGAGCGCGTAGTGAGTGGGGAGGCTCGGGCAGTTGAACAGGCCTCCATAGTTGCTCCCGAAGTTTCGCATTTGGGGTGGGGCCATTGGTATACCTTGAGAGAGCTCGAGGCTTCCACGAATGCGTTTGCCGACGACCACGTTATTGGGGAAGGTGGGTATGGGATTGTTTACCATGGTGTCTTGGAGGATAACACACAGGTTGCTGTCAAGAACTTGCTCAATAATAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTAGAAGCAATTGGACGAGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTACTGTGCGGAAGGAGCTCATAGGATGCTTGTGTATGAGTATGTAAATAATGGGAATTTGGAGCAGTGGCTTCATGGTGATGTAGGGCCTCGAAGTCCTCTTACTTGGGAGATTCGAATGAATATAATCCTGGGAACTGCAAAAGGGTTAACTTATCTTCATGAGGGACTTGAACCCAAAGTTGTTCACCGTGATATAAAATCGAGCAACATTTTACTTGATAAGCAGTGGAATCCCAAGGTTTCAGACTTTGGCCTTGCCAAGCTCCTTGGCTCAGAGCACAGCTATGTAACAACCCGAGTGATGGGAACATTTGGCTATGTAGCTCCTGAATATGCAAGTACAGGCATGTTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATCATGGAAATAATTTCTGGGAGGAATCCAGTCGACTATAGCCGCCCTCCAGAAGAGGTGAACTTAGTTGACTGGCTTAAGAGGATGGTTACCAGCAGGAATCCAGAGGGAGTTTTGGATCCAAAGATACCTGAGAAGCCGACTTCAAGGGCCTTGAAGCGGGCTCTTCTCGTAGCTCTGCGCTGTGTTGATCCAAACTCACAGAAGCGGCCAAAAATGGGTCATGTTATACATATGCTTGAAGCTGAAGAATCCCCCTTCAGAGATGATCGTAGAGCAGGGAGAGATTCAGTACGTGCACATCGTGACAGCCCAAGGAATGGATTGATGGAGAAGCGAGTCACAGAATCAGGGGATAGTAGTGGGTATGAAAGTGGGGCTCATGCCAATAGACAAAGGTGGAGACAAGAAGAAAGCCAAGCAGAAAAGCAGTGA 1530 0.4778 MSDHRTTLMNDQLSKPTSIFGLRLWVVLGVCVGAAFVLLLFLISLWLTSKRNNSSKIRPSQKPTIPAVSKEIQEIRIDHGHRSQIQADPFPESDQLAGIEGQALLLPPGEESPGGVHRIHIELGKDHRISYPERVVSGEARAVEQASIVAPEVSHLGWGHWYTLRELEASTNAFADDHVIGEGGYGIVYHGVLEDNTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVNNGNLEQWLHGDVGPRSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSEHSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEIISGRNPVDYSRPPEEVNLVDWLKRMVTSRNPEGVLDPKIPEKPTSRALKRALLVALRCVDPNSQKRPKMGHVIHMLEAEESPFRDDRRAGRDSVRAHRDSPRNGLMEKRVTESGDSSGYESGAHANRQRWRQEESQAEKQ* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1243 509 MobiDBLite consensus disorder prediction 451 509 - -
Vvi7g1243 509 FunFam Putative receptor-like serine/threonine-protein kinase 250 460 - -
Vvi7g1243 509 SMART serkin_6 174 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1243 509 SUPERFAMILY Protein kinase-like (PK-like) 158 445 IPR011009 -
Vvi7g1243 509 Gene3D Transferase(Phosphotransferase) domain 1 250 465 - -
Vvi7g1243 509 MobiDBLite consensus disorder prediction 495 509 - -
Vvi7g1243 509 FunFam Probable serine/threonine-protein kinase At1g01540 154 249 - -
Vvi7g1243 509 PANTHER OS01G0323000 PROTEIN 7 466 - -
Vvi7g1243 509 Pfam Protein kinase domain 176 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1243 509 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Vvi7g1243 509 CDD STKc_IRAK 180 446 - -
Vvi7g1243 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vvi7g1243 509 ProSiteProfiles Protein kinase domain profile. 174 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1243 509 Gene3D Phosphorylase Kinase; domain 1 139 249 - -
Vvi7g1243 509 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1243 Vvi-Chr7 16701492 16704324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1243 155 494 Receptor kinase-like Gene Family AT4G02010 41.618 1.24e-84 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi7g1243 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1243 - - vvi:100254248 1016.14