Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1242 ATGATGGGGAAGCAACGGCTTTCTTCCATGTTCACTTCTTCAGTTTTCAAGAAAAGTAGGGATGATAAAGTTAAGGGACTGTCGTGTGATAGTATAGTGGATGATGTGATTGCTGAATTTGCTCCTGATGAGGCTGATAGAGAGAGGCGTCGGAGGGGACAATCGGGGTTGGTGTCTGGTGGGAGGAATTTTGTTCCGGGTACCACCATTAAGATGGAGATATCACCGATTTCGATTAGGCCTGAGCCTACCAAGGTCACTATAGCAGATGGTGATTCCGTGTCAAGTTCAATGCAAAACGGCAATATGGTTGAGGGAAAGGGTGTAGTTAAAGAATCCAAAGATGCAAATGATTTGAATTGTGGTTTGGGTGATAGAAGAGATTTTCTGGAAGAAACCAAAGATGGAAAAGATTTGAATTCGAAAATGGATGCAGAGTCAATTGTCCAATCACATGATCCTTTAACCAAGGTAGATGCAGTTGAGGAGACTGTGCCAGATGCGGTTGAGGATAAATCAGAGCAGGCTGTGAAGAGAAAGGAGGTTCATTCACTCAATGCAAAAATTAAAGAGGAGAAAGACCTGACATTGAGTGCCGCCACTGCCGGGTGGCAGGCAGTAAGGAATGGAGGCAATCCTAGTGCTGGTTATGAGGGAGAGGTGGTTAATCCTAGTTTGAATTGTGAGGAGAAGGCAGATTTTTTGCTGGATTCAGATGGGTCACTGCCTTTCTACATACTTGATGCCCACGAGGAATTTTATGGTGCTAATATGGGCAACCTCTATCTGTTTGGGAAGGTTAAAGCAGGAAGTGCATATCATAGCTGCTGTGTGGTGGTAAAGAACATGGAGCGATGTGTCTATGCAATCCCAAATGATTCGGTGTTTGGCAATGATGAAATCATGAGGCTTGAGAAAGATATCGAAGCCTCTCGGGTTTCTCCTGCAGCTTTGAGGACAAAATTGCAAGACGTGGCATCAGGATTAAAGAATGAAATAGCAAAACAGTTGTTAAATCTCAATGTTTCAACTTTTAGCATGACGCCAGTTAAGAGGAGTTATGCATTTGAGCGAGCTGATATACCTGTCGGGGAGAATTATGTCCTAAAGATTAATTACCCATTTAAGGACCCACCACTTCCAGCAGATCTCAAAGGAGAGGCATTTTGTGCTCTGCTTGGAACTCATTGCAGTGCTTTAGAGCTTTTTCTCATTAAAAGGAAGATTATGGGACCTTACTGGCTCTCAATTTCAAAATTTTCCAGTTGTCCAGCTCCTGAACGGGTGAGCTGGTGCAAATTTGAGGTTACTGTTGATTGTCCAAAGGACATAAGGATTTTGGCTTCCTCTTCAAAGAACATAGCAGAGATTCCACCAGTGGTTGTAACAGCTATCAATTTGAAAACTATCATCAATGAAAAACAGAATGTAAATGAAATAGTGTCTGCATCTGTCATCTGCTGTCATAAGGTCAAGATTGATTCCCCCATGTTACCCTCAGAATGGAAGAGGCCTGGTGTGCTCAGCCATTTTACTGTTGTACGCAAACTTGATGGAGGCATATTCCCAATGGGGTTCACTAAAGAGGCTTCAGATAGAAACTCTAAGGCTGGAGCAAATGTTCTATGCTCTGAAATCAGTGAAAGAGCTCTTTTAAACCGTCTGATGATTGAGCTGTACAAATTGGATAGCGATGTTCTTGTTGGTCATAATATTTCTGGGTTTGATCTGGATGTTCTTCTCCACAGAGCTGAGGCTTGCAAAGTTCCCATGTGGTCCAAGATAGGTCGTCTCAAGCGTCGGGTGATGCCTAAGCTTACCAGAGGAAGCACCATTTTTGGTTCCGGAGCAAGCCCAGGGATCATGTCTTGCATTGCTGGTCGGCTTTTATGTGATACTTATCTGTGTTCCCGTGACCTATTAAAAGAAGTCAGTTATTCTTTGACACAACTTGCAAAGACTCAGCTGAACAAAGATCGGAAGGAGATTGCTCCACAAGATGTTTCTAGAATGTTTCAAACATCGGAATCCCTTGTGCAACTTATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAGGTGCTAGGGCACAGAGAGTAGAATATCTTCTATTGCATGAGTTCCATGCAAAGAAGTATATTGTCCCAGATAAGATTTCTTCTCATTTGAGGGAAACAAAATGGACAAAACGAAGAATGAATCAAGGTGGTGCTGAGGACAGAAATATTGATGAACTGGATGTTGATGATGCACATGTTGAGAATGATGCTCATCATAACAATCAAGGAAAAGGAAAAAAAGGTCCAGCCTACTCCGGTGGATTGGTTTTGGAACCAAAGAGAGGCTTGTATGACAAGTATATATTACTTTTGGACTTCAATAGCCTTTACCCTTCAATCATTCAGGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAGTTGTTGAAAAAATTAGTTGAGAGGAGGAAAACCGTAAAGTCTAGGTTAAAGACAGCATCTGGTCTCAAGGTCCAGCAGCTTGACATTCAGCAGCAGGCACTGAAACTCACTGCAAATAGTATGTATGGATGCCTGGGGTTTTCCAATTCAAGATTTTATGCAAAGCCACTGGCAGAGCTTATAACACTACAAGGAAGGGAGATTTTGCAGAGTACTGTTGATCTCGTTCAGAATAATCTAAACTTGGAGGTGATATATGGTGATACTGATTCAATTATGATTTATACTGGGCTGGATGATATTACAAAAGCCAAAGCAATTGCAGGGAAAGTCATTCAAGAGGTCAACAAAAAATATAGGTGTTTAGAAATTGATCTCGATGGCTTGTACAAGAGAATGCTGCTTCTCAAGAAAAAGAAATATGCAGCTGTCAAATTACAGTTCAAAGATGGTACACCATATGAGGTTATTGAACGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGTTTACTATCAAAGGAATTGGGAGATTTCAGCTTAAGTCAAATCTTGTCTGGAGGGTCGTGTGAGGATGTTGTTGAATCAATACACAACTCTCTCATGAAGGTACAAGAGGACATGAGGAATGGAGAAGTAGCACTAGAGAAATATATTATCACTAAGTCATTGACTAAACCCCCTGAAGCGTACCCAGACAAGAACCAACCACATGTTCAAGTGGCACTAAGATTGAAGCAAAGTGGTTACTCAACTGGTTGCTCAGCTGGTGATACAGTCCCTTATATTATTTGCTGTGAGCAGGGGACTAGTTCAGGTAGTTCAACAGGGATAGCACAGCGTGCTAGACATCCTGATGAATTGAAAAGAGACAATGGAAAATGGATGATTGACATTGATTACTACTTGGCACAGCAGATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAGTTCCAAAGTAGACGAAGTGAGGCCATCAACAATGATTTTTCCATCTCACTCTTGTCTGCAGATGAGGAGAGATATAGAGGTTGTGAGCATCTAATCTTGTCTTGTCCAAGCTGCTTTGGTACTTTTGACTGCCCAACTTTGTTCAATTCTGTGCATACATCAATCACTGAAAAATCAACACAAGTGCAAGTAGAGGAATCCAACAATTTCTGGCAAAGGTTACGTTGCCCTAAATGCCCAGAGGAAGGTGATGTGGGTAGAATGTCTCCTGCATTGATAGCCAACCAGGTTAAGAGGCAAGCTGATGGGTTCATCTCAATGTACTATAAGGGTTCAATGATGTGTGATGATGAAACCTGCAAGCACACCACAAATAGTCTCAACCTGCGGGTGATTGGGGATTCCGAGAGAGGAACGGTTTGTCCTAACTACCCTCGCTGTAATGGCCGGCTTGTAAGAAAGTACACGGAAGCAGATCTTTACAAGCAGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTGGCAAGAATTCGGCCGTTAGTTAACTTGGCAGCATCAACGACTCAAAAGATTAGGGACCGGTGCGCCTACGGATGGGTGCAACTGGATGACCTTACTGTTACAGTTTAA 4275 0.4243 MMGKQRLSSMFTSSVFKKSRDDKVKGLSCDSIVDDVIAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPISIRPEPTKVTIADGDSVSSSMQNGNMVEGKGVVKESKDANDLNCGLGDRRDFLEETKDGKDLNSKMDAESIVQSHDPLTKVDAVEETVPDAVEDKSEQAVKRKEVHSLNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLPFYILDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEIMRLEKDIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADIPVGENYVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFSSCPAPERVSWCKFEVTVDCPKDIRILASSSKNIAEIPPVVVTAINLKTIINEKQNVNEIVSASVICCHKVKIDSPMLPSEWKRPGVLSHFTVVRKLDGGIFPMGFTKEASDRNSKAGANVLCSEISERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAEACKVPMWSKIGRLKRRVMPKLTRGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRKEIAPQDVSRMFQTSESLVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQGARAQRVEYLLLHEFHAKKYIVPDKISSHLRETKWTKRRMNQGGAEDRNIDELDVDDAHVENDAHHNNQGKGKKGPAYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGSVPRLPSSKTTGVLPELLKKLVERRKTVKSRLKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKSLTKPPEAYPDKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLSADEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQVEESNNFWQRLRCPKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTVRCIEKMEVSTRIPIEKELARIRPLVNLAASTTQKIRDRCAYGWVQLDDLTVTV* 1425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1242 1424 FunFam DNA polymerase 857 906 - -
Vvi7g1242 1424 Gene3D - 284 410 - -
Vvi7g1242 1424 MobiDBLite consensus disorder prediction 41 55 - -
Vvi7g1242 1424 MobiDBLite consensus disorder prediction 41 64 - -
Vvi7g1242 1424 Gene3D - 458 771 IPR036397 GO:0003676
Vvi7g1242 1424 Gene3D - 1023 1208 IPR042087 -
Vvi7g1242 1424 FunFam DNA polymerase 458 770 - -
Vvi7g1242 1424 NCBIfam DNA polymerase (pol2) 4 1176 - -
Vvi7g1242 1424 Gene3D - 244 443 - -
Vvi7g1242 1424 SUPERFAMILY Ribonuclease H-like 343 737 IPR012337 -
Vvi7g1242 1424 FunFam DNA polymerase 1215 1410 - -
Vvi7g1242 1424 CDD DNA_polB_alpha_exo 458 706 - -
Vvi7g1242 1424 SUPERFAMILY DNA/RNA polymerases 740 1194 IPR043502 -
Vvi7g1242 1424 ProSitePatterns DNA polymerase family B signature. 947 955 IPR017964 GO:0000166|GO:0003676
Vvi7g1242 1424 Gene3D DNA Polymerase alpha, zinc finger 1216 1409 IPR038256 -
Vvi7g1242 1424 Gene3D Palm domain of DNA polymerase 784 1009 IPR023211 -
Vvi7g1242 1424 CDD POLBc_alpha 792 1194 IPR045846 GO:0003887|GO:1902975
Vvi7g1242 1424 PRINTS DNA-directed DNA-polymerase family B signature 945 953 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi7g1242 1424 PRINTS DNA-directed DNA-polymerase family B signature 816 829 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi7g1242 1424 PRINTS DNA-directed DNA-polymerase family B signature 892 904 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi7g1242 1424 FunFam DNA polymerase 1023 1208 - -
Vvi7g1242 1424 Gene3D Helix hairpin bin 855 906 - -
Vvi7g1242 1424 Pfam DNA polymerase family B, exonuclease domain 273 649 IPR006133 -
Vvi7g1242 1424 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1 1422 - -
Vvi7g1242 1424 FunFam DNA polymerase 284 410 - -
Vvi7g1242 1424 SMART polmehr3 458 959 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi7g1242 1424 Pfam DNA polymerase family B 715 1178 IPR006134 GO:0000166|GO:0003677
Vvi7g1242 1424 Coils Coil 973 993 - -
Vvi7g1242 1424 Pfam DNA Polymerase alpha zinc finger 1217 1420 IPR015088 GO:0003887|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1242 Vvi-Chr7 16682585 16697263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1242 1 1422 Core DNA Replication Machinery Family AT5G67100 63.693 0.0 1784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1242 K02320 - vvi:100250805 2803.47