Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1240 ATGGCGGATCAGTACACCAAGCCTTGCTCTTCTTCTCCTGTGCCACCGTCATCCGCTTCGGAACCGGACGAAATATCTCTCTTTCTCCACCAGATTCTTTTCCGGTCGTCGTCGTCGTCGTCAACCACTTCGCTTCACAATGCCAAACTTATGCCGAGCGAGTTTCTGTCGGAGAATCCTCTCAGACAGTGTCGATCCCCTCTTATTTCCAGCTCGGATCGCCTCGTTCGGGACGGAATGAACTCCTCCACCGGCGTTTATTTTCCCGTGAGTGCCGGAACTGCGTCTTCGTCGGCTGGAGGCTTCGACAATGACCTGGACGAGTACGACTGCGAGAGTGAGGAAGGTCTTGAAGCATTGGTGGAAGAGGTGGCGACAAAGGCAGCTCCTCTGCGAAGTTCGTCGAAGAGAAGCAGGGCTGCCGAGGTCCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATTAACGAGAAAATGAAAGCGTTGCAGAATCTAATTCCAAATTCTAACAAGACAGACAAGGCTTCCATGCTTGATGAGGCCATCGAATACCTCAAGCAGCTTCAGCTTCAAGTACAGATGTTATCAATGAGAAATGGGTTAAGTTTGCATCCTATGTGTCTACCTGGAGTACTGCCGCCTGTCCAACTTTCCCAGATGAGAATAGGCATTGGAGAGGAAAATGGATCCCTGCATATGGACATGACTGGCACACTTCCTGTGAACCAAGAAACCATGGAATACAGGCTAGCCAACCAAGGCACCTCCTCAAGTCATCCATCGGTCCCCAACTTGACAGATATAATGAATTCAGAAACTTCATTTGGATTGGAATCATCAATCCAGGCTCACCTTGGACCTTTTCAGCTCCAAACATCCTCTGCGGATATCTGCAGGGAAGACGTGTTGCCTCATCAGCAGTTAAACATAAGTTGTGCAGGAACAAATTCATTAGTGTCACTACCCTATGATGCACAAGCTTCTGGTGTGAAAGACAGCAACACTCTGGAATCGTGCATCCAAAGAAGAGATCTGTCTGAAGGCATGCTCCTAAAGAACATTGAACACAACCAAGTTCCTTTTCCCCAATTGAATGGCATGCATACGGGTAGAAGTGTTCCCAATGATGACATGAAGACAGATAGGCTTGATTTTTGA 1158 0.4801 MADQYTKPCSSSPVPPSSASEPDEISLFLHQILFRSSSSSSTTSLHNAKLMPSEFLSENPLRQCRSPLISSSDRLVRDGMNSSTGVYFPVSAGTASSSAGGFDNDLDEYDCESEEGLEALVEEVATKAAPLRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCLPGVLPPVQLSQMRIGIGEENGSLHMDMTGTLPVNQETMEYRLANQGTSSSHPSVPNLTDIMNSETSFGLESSIQAHLGPFQLQTSSADICREDVLPHQQLNISCAGTNSLVSLPYDAQASGVKDSNTLESCIQRRDLSEGMLLKNIEHNQVPFPQLNGMHTGRSVPNDDMKTDRLDF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1240 385 FunFam Basic helix-loop-helix transcription factor 134 197 - -
Vvi7g1240 385 Coils Coil 178 198 - -
Vvi7g1240 385 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g1240 385 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 296 IPR031066 -
Vvi7g1240 385 MobiDBLite consensus disorder prediction 137 151 - -
Vvi7g1240 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Vvi7g1240 385 MobiDBLite consensus disorder prediction 128 151 - -
Vvi7g1240 385 SMART finulus 145 194 IPR011598 GO:0046983
Vvi7g1240 385 MobiDBLite consensus disorder prediction 361 385 - -
Vvi7g1240 385 MobiDBLite consensus disorder prediction 1 19 - -
Vvi7g1240 385 Gene3D - 134 198 IPR036638 GO:0046983
Vvi7g1240 385 CDD bHLH_AtPIF_like 139 201 IPR047265 -
Vvi7g1240 385 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Vvi7g1240 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1240 Vvi-Chr7 16661373 16667706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1240 104 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 54.839 2.66e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1240 HLH 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1240 - - vvi:100245665 734.561