Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1239 ATGGTGGTATATCAGCTTCTTAGACTTTTGGGTCAAGATGTACTGGTCGACTCGCCTTCCCACCAGGCCGGTTCTAATTCGGCTCCTGCCCACCAGGCAGCTTCTATCTTGGAACTCAGGACCCAGCCACCTACTAACTTAGCGCCAGTCTCTGAAGAAGCTGCTAGTTTGGCACCTGCTACCTGGCTGCCTCCGTACTTGCCTGCCCTCCGCGCTGCTACTAGTTTGGCACCGGCTAACTGGCTGCCTGCTTACTTGGAACCTGCCGACCAGGTAGAAAATAACTTTGCGCCAGTTAGTTGGGATGAAAATGACTTTGACGAAGAGGAGGAGGACGATGATTATAACAATGAAGATATGCGTGCAGATGTGGACAACATGTCCTACGAGGAACTGCTAGCACTGGAGGACCATATTGGGAATGTCAGCACTGGCTTGAACGAGGACGCCATCAAGGCAAAGCTTAAGCCAAAGAAGTACAGCAGTTTCACAATGGGCCCTCCTGTGGAGGGCGAGATCTGCTGCATCTGCCAAGAAGAGTATGAAGAAGGCGAAACGATGGGAATACTCGACTGCGGGCACGAGTTCCATTCCGACTGCATTAAACAGTGGCTTGTGCAGAAGAATTTGTGCCCCATATGCAAGACGGCCGCGCTTGTATAA 663 0.5158 MVVYQLLRLLGQDVLVDSPSHQAGSNSAPAHQAASILELRTQPPTNLAPVSEEAASLAPATWLPPYLPALRAATSLAPANWLPAYLEPADQVENNFAPVSWDENDFDEEEEDDDYNNEDMRADVDNMSYEELLALEDHIGNVSTGLNEDAIKAKLKPKKYSSFTMGPPVEGEICCICQEEYEEGETMGILDCGHEFHSDCIKQWLVQKNLCPICKTAALV* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1239 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 218 IPR013083 -
Vvi7g1239 220 SUPERFAMILY RING/U-box 128 217 - -
Vvi7g1239 220 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Vvi7g1239 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 25 219 IPR045191 GO:0061630
Vvi7g1239 220 SMART ring_2 174 214 IPR001841 -
Vvi7g1239 220 FunFam E3 ubiquitin-protein ligase MBR2 141 219 - -
Vvi7g1239 220 Pfam Ring finger domain 174 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1239 Vvi-Chr7 16651426 16652337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1239 117 219 C3H Transcription Factor Family AT2G15530 58.716 4.93e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1239 - - vvi:104879941 416.001