Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1237 ATGGTTTTAAAAAATGGACTGGACAGGCCGGTACAACAAGCCCATAGGCATTGGGGTAGTTGGGTCTGTGAAATCCACCACCCACTTTTGAAGACTAGAATTTGGCTGGGCACATTCGAAACGACAGAGGACGCTGCTCGGGCTATGACGAGGCGGCGAGGCTCATGTGTGGTCCGAGGACGAGAACCAACTTCCCTTACAATCCGAACACCTCCCTGTTATCGTCTTCCAAGCTTCTTTCAGCTACTTGAACTGCCTTTTCTATTTAAAAAACTAACTTTTTCTATTTAG 291 0.4708 MVLKNGLDRPVQQAHRHWGSWVCEIHHPLLKTRIWLGTFETTEDAARAMTRRRGSCVVRGREPTSLTIRTPPCYRLPSFFQLLELPFLFKKLTFSI* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1237 96 SMART rav1_2 15 68 IPR001471 GO:0003700|GO:0006355
Vvi7g1237 96 SUPERFAMILY DNA-binding domain 15 51 IPR016177 GO:0003677
Vvi7g1237 96 Gene3D AP2/ERF domain 9 62 IPR036955 GO:0003700|GO:0006355
Vvi7g1237 96 CDD AP2 9 55 IPR001471 GO:0003700|GO:0006355
Vvi7g1237 96 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 50 - -
Vvi7g1237 96 ProSiteProfiles AP2/ERF domain profile. 7 48 IPR001471 GO:0003700|GO:0006355
Vvi7g1237 96 Pfam AP2 domain 15 48 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1237 Vvi-Chr7 16641499 16644428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1237 15 48 AP2-EREBP Transcription Factor Family AT5G25190 88.235 1.55e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g1237 AP2 6.4e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1237 - - dcr:108221967 70.4774