Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g1236 | ATGCATCTTGACATCGACAGCATGTCATATGAGGAATTGCTTGCACTTGGAGAGCACATTGGAAGTGTGAGCACAGGGCTTAGTGAGGAAGTAATTATGGCTAAGATGGAGCAATGGAAGTATAGCTGCTCAAAAACAGGCTCTTCAGTTGATGCAGAGATTTGTTGCATATGTCAGGAGGAGTATGCAGATGATGATGGTGTTGGAAATCTAGACTGTGGGCATGTGTATCATGTTGCCTGCATCAAGGAATGGTTGGCACAGAAGAACTCATGCCCCATTTGCAAGAATACTGCCTTGGCTACTTGA | 309 | 0.4466 | MHLDIDSMSYEELLALGEHIGSVSTGLSEEVIMAKMEQWKYSCSKTGSSVDAEICCICQEEYADDDGVGNLDCGHVYHVACIKEWLAQKNSCPICKNTALAT* | 103 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g1236 | 102 | ProSiteProfiles | Zinc finger RING-type profile. | 55 | 96 | IPR001841 | - | |
Vvi7g1236 | 102 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 100 | IPR013083 | - | |
Vvi7g1236 | 102 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 1 | 100 | IPR045191 | GO:0061630 | |
Vvi7g1236 | 102 | SUPERFAMILY | RING/U-box | 34 | 98 | - | - | |
Vvi7g1236 | 102 | Pfam | Ring finger domain | 54 | 96 | IPR001841 | - | |
Vvi7g1236 | 102 | SMART | ring_2 | 55 | 95 | IPR001841 | - | |
Vvi7g1236 | 102 | FunFam | E3 ubiquitin-protein ligase MBR2 | 22 | 100 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi7g1236 | Vvi-Chr7 | 16623222 | 16623766 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi7g1236 | 1 | 102 | C3H Transcription Factor Family | AT2G15530 | 60.377 | 2.71e-38 | 133 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g1236 | - | K19041 | vvi:104879920 | 218.009 |