Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1236 ATGCATCTTGACATCGACAGCATGTCATATGAGGAATTGCTTGCACTTGGAGAGCACATTGGAAGTGTGAGCACAGGGCTTAGTGAGGAAGTAATTATGGCTAAGATGGAGCAATGGAAGTATAGCTGCTCAAAAACAGGCTCTTCAGTTGATGCAGAGATTTGTTGCATATGTCAGGAGGAGTATGCAGATGATGATGGTGTTGGAAATCTAGACTGTGGGCATGTGTATCATGTTGCCTGCATCAAGGAATGGTTGGCACAGAAGAACTCATGCCCCATTTGCAAGAATACTGCCTTGGCTACTTGA 309 0.4466 MHLDIDSMSYEELLALGEHIGSVSTGLSEEVIMAKMEQWKYSCSKTGSSVDAEICCICQEEYADDDGVGNLDCGHVYHVACIKEWLAQKNSCPICKNTALAT* 103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1236 102 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Vvi7g1236 102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 100 IPR013083 -
Vvi7g1236 102 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 100 IPR045191 GO:0061630
Vvi7g1236 102 SUPERFAMILY RING/U-box 34 98 - -
Vvi7g1236 102 Pfam Ring finger domain 54 96 IPR001841 -
Vvi7g1236 102 SMART ring_2 55 95 IPR001841 -
Vvi7g1236 102 FunFam E3 ubiquitin-protein ligase MBR2 22 100 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi7g1236 Vvi-Chr7 16623222 16623766 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1236 1 102 C3H Transcription Factor Family AT2G15530 60.377 2.71e-38 133
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1236 - K19041 vvi:104879920 218.009