Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1235 ATGGAAGGTGATGAACGCAGGCAAGGTTCAAGTTCTCACGATCCGACATTAGAAAGAAGAGCACCTGATAGTGGTGGTCTAACCTCTACCGACCAACTGCATGAAGAATCCACATCCAATGCTTCTTTGAACAGTGCCACATGTGGGGTTGGCACTACAGAAGCATCTTCTACGCTGGCAGGTCCAAGTTTAGCTGCAGAGGCAGGAGAAGTCCTCGTAAGTAGTACTCGGCAAAGAACTGCTCCATCTGACCAAGAAAATTTGGTTGACAATGCAATGGGACTCCAAGACCATGGCAGCACCATACAATTTCGGAGTCATACTAGGGTTCCAGGCCACTGGTGGTTACTTGGTGTGATTTACCAGGATGTTGAGGATGAAGATTACGAGGATGACTCAGATGACTCAGATGACTCAGAAGATGACATGCATCTTGTCAATGATAACACGTCATATGGGGAATTGCGTGAGCTTGGAGAGCACATTGGCAATGTAAGCAACGGGCTAAGGGAGGAAGTAATTATGGCTAAGCTGAAGCGACACAAGTATAGCTGCTCAACAATGGGCTATCCAGTTGATGCGGAGACTTGCTGCATATGTCAGGAGGAGTATGCAGATGATGAAGATGTTGGGAAGCTGGACTGTGGACATGAGTATCATGTAGTCTGCATCAAGGAATGGCTGTCAAAGAAGAACTCTTGCCCCATTTGCAAGAAGACTGCCTTGGCTGCATGA 735 0.4721 MEGDERRQGSSSHDPTLERRAPDSGGLTSTDQLHEESTSNASLNSATCGVGTTEASSTLAGPSLAAEAGEVLVSSTRQRTAPSDQENLVDNAMGLQDHGSTIQFRSHTRVPGHWWLLGVIYQDVEDEDYEDDSDDSDDSEDDMHLVNDNTSYGELRELGEHIGNVSNGLREEVIMAKLKRHKYSCSTMGYPVDAETCCICQEEYADDEDVGKLDCGHEYHVVCIKEWLSKKNSCPICKKTALAA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1235 244 MobiDBLite consensus disorder prediction 1 20 - -
Vvi7g1235 244 SUPERFAMILY RING/U-box 196 241 - -
Vvi7g1235 244 FunFam E3 ubiquitin-protein ligase MBR2 164 242 - -
Vvi7g1235 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 242 IPR013083 -
Vvi7g1235 244 SMART ring_2 197 237 IPR001841 -
Vvi7g1235 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 242 IPR045191 GO:0061630
Vvi7g1235 244 Pfam Ring finger domain 196 238 IPR001841 -
Vvi7g1235 244 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Vvi7g1235 244 MobiDBLite consensus disorder prediction 23 56 - -
Vvi7g1235 244 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1235 Vvi-Chr7 16616256 16618016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1235 119 242 C3H Transcription Factor Family AT2G15530 47.244 1.01e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1235 - K22753 vvi:100247468 474.167