Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1234 ATGGCTAAGATGGAGAAATGGAAGTATAGCTGCTCAACAACAGGGCATTCAGTTGATGCAGAGACTTGCTGCATATGTCTGGAGGAGTATGCAGATGATGATGATGTTGGAAAGCTAGACTGTGGGCATGAGTATCATGTTGCCTGCATCAAGGAATGGTTGGTACAGAAGAACTCATGCCCCATTTGCAAGAATACTGCCTTGGCTACCTGA 213 0.4554 MAKMEKWKYSCSTTGHSVDAETCCICLEEYADDDDVGKLDCGHEYHVACIKEWLVQKNSCPICKNTALAT* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1234 70 SUPERFAMILY RING/U-box 7 66 - -
Vvi7g1234 70 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Vvi7g1234 70 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 68 IPR045191 GO:0061630
Vvi7g1234 70 SMART ring_2 23 63 IPR001841 -
Vvi7g1234 70 Pfam Ring finger domain 22 64 IPR001841 -
Vvi7g1234 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1234 Vvi-Chr7 16612579 16612919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1234 21 70 C3H Transcription Factor Family AT2G15530 60.000 1.39e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1234 - K22753 vvi:104879920 138.272