Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1233 ATGGGACTCCAAGGCCGTGGTGGTACCATACAGTATCGGAGTCATACTAGGTTTCCAGGCTACTGGAGGTTATTAGACGTGATTTACCTGCCTGATGAAAATGAAGATGAGGATGATGAGAATGATGACATGCGTCTTGACATTGATAACATGTCGTATGAGGAATTGCTTGCTCTTGGAGAGCACATTGGAAATGTCAGCACAGGGTTGAGCAAGGAAGTGATTATGGCAAGGCTGAAGCAAAGGAAGTATATTTGCTTAGCAACAGGCCCTTGTGTTGGTGAGAAAACTTGCTGCATATGTCAGGAAGAGTATGCAGATGATGATGATATCGGAAAGCTAGATTGTGAGCACGAGTATCATGTTGCCTGCATCAGGGAATGGCTGGTACAGAAGAACTCGTGCCCCATTTGCAAGAAGACTGCCTTGGCTACCTGA 438 0.4566 MGLQGRGGTIQYRSHTRFPGYWRLLDVIYLPDENEDEDDENDDMRLDIDNMSYEELLALGEHIGNVSTGLSKEVIMARLKQRKYICLATGPCVGEKTCCICQEEYADDDDIGKLDCEHEYHVACIREWLVQKNSCPICKKTALAT* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1233 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Vvi7g1233 145 ProSiteProfiles Zinc finger RING-type profile. 98 139 IPR001841 -
Vvi7g1233 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 34 143 IPR045191 GO:0061630
Vvi7g1233 145 Pfam Ring finger domain 97 139 IPR001841 -
Vvi7g1233 145 SMART ring_2 98 138 IPR001841 -
Vvi7g1233 145 FunFam E3 ubiquitin-protein ligase MBR2 65 143 - -
Vvi7g1233 145 SUPERFAMILY RING/U-box 97 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1233 Vvi-Chr7 16601231 16602190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1233 36 145 C3H Transcription Factor Family AT2G15530 54.783 1.48e-38 136