Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1231 ATGGAAGAACTTGAAGTAGATCATCAATGTACCTCAGAGGCTTCTAGCAGCTCTGCAACATCAGAGGGAACTCCATCCAAGGATGGGGAAAAGGCGAAGACGTTGAAGATGAAAGGAAAAGGAAAAGTTATTGCAGAGGGTTCTGAAGCAGAGCCAAAATCCGAATCGGGTTCAAGCCTTTTGCTTGATCTAAGACTCTCCAATGACGATTCTACGGTGGAACTCAACCTCTGCAACTCTCTCAACATGGCTTCTTCACCGAAAACGAAGATGATGGAACGTGAAAAACAATCCGATAGGCGGGTTTTTTCCTGCAATTTCTGCAAGAGAGAGTTCTCCACTTCACAAGCACTGGGTGGACACCAAAATGCACATAAACAAGAGCGTGCAATGGCAAAAAGGCGACAAGGTATGGATATGCCAGGCTTTGGACATCCACACTTTCATTATTATACCTATTCAAGCATCCCACACGTCCCTTTATATGGCTCTTTCAATAGGTCACTTGGGGTGAGGATGGAGTCTATGATTCACAAGCCTCCTTACTCATGGATGACGCCGCCGCCATCTGGGTACCAATTTGGCCATGGTGGGTGGCTTAAGCCTACCATGATGAGCCCACAATCATCTTTTGAGCATAGAATGAGAAGGGAGGATTTTCAAATCCACGGTGGTGGTAGTAGTGGATTTGGAGCTCCTGCAGGGCCTTCTTCTACGATTGAGGGAAGTGGTGGTGGTGGTGCAATTTCAAGCCTTGTTGGAGGTTCCAATTCAAACGGTAATGACTCCAGCATTTTGGCTAACAAGACAAGTGGAGGTGGTAATCTTTGGCAAGGGGGCCATAAGGAAGATGATCAACCAGGGGGACTGAATCTAGATTTGTCTCTCTAG 891 0.4658 MEELEVDHQCTSEASSSSATSEGTPSKDGEKAKTLKMKGKGKVIAEGSEAEPKSESGSSLLLDLRLSNDDSTVELNLCNSLNMASSPKTKMMEREKQSDRRVFSCNFCKREFSTSQALGGHQNAHKQERAMAKRRQGMDMPGFGHPHFHYYTYSSIPHVPLYGSFNRSLGVRMESMIHKPPYSWMTPPPSGYQFGHGGWLKPTMMSPQSSFEHRMRREDFQIHGGGSSGFGAPAGPSSTIEGSGGGGAISSLVGGSNSNGNDSSILANKTSGGGNLWQGGHKEDDQPGGLNLDLSL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1231 296 MobiDBLite consensus disorder prediction 26 49 - -
Vvi7g1231 296 MobiDBLite consensus disorder prediction 1 58 - -
Vvi7g1231 296 Pfam C2H2-type zinc finger 102 127 - -
Vvi7g1231 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 296 IPR044246 GO:0009788
Vvi7g1231 296 MobiDBLite consensus disorder prediction 250 275 - -
Vvi7g1231 296 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Vvi7g1231 296 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vvi7g1231 296 MobiDBLite consensus disorder prediction 224 296 - -
Vvi7g1231 296 Gene3D Classic Zinc Finger 80 140 - -
Vvi7g1231 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vvi7g1231 296 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1231 Vvi-Chr7 16589850 16590740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1231 74 204 C2H2 Transcription Factor Family AT1G80730 39.716 1.79e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi7g1231 zf-C2H2_6 2.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1231 - - vvi:104879940 537.339