Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1215 ATGGAAATCGCCGGACCGCCGCTGGCTTCCGATAGTGAAGATAGAAATGAGGAGGACGAGGACGTGTGCCGAATTTGTCGAAACTCTGGGGACTCTGATAACCCTCTCTATTACCCGTGTGCTTGTCGTGGCAGTATCAAATTTGTTCACGAAGATTGCCTCCTTCAGTGGCTTGACCGTAGTAAAACTCGCCGTTGTGAGGTCTGCAGGCATATGTTTTTGTTCTCCCCCATTTATGCCGAGGATGCACCAGCAAGGCTTCCTCTCAGAGAGTTCATAACTGTGATCACATTCAAAGTGTTCGATGTGCTGCAAATCTTTCTACACAGTGCCTTCTCATTTTCTGTTTATTTCCTGCTAATTTCGTTTGGTACATATTGGATATGGCAATTAGCTTTTGTGAGGAGTTTAAGTGAAGCCCAAAAATTATTCTCAAGTCATATATCTACTAAAACGATTGCTATCAATTGTTTTCATGGCTATCTACTTTCTGGCATCATTAAATTTGTCTTTCATGGGTTCACATTTTTGAGAGATTTCTTTATTCATCTGTGGGACCTAAGAAGACAGAACCTTGAGGGAGAAAATGGGGGCAGAGATGGTGTTCATGCTGCCAGAAGGCCTCCTGACAATGCTGATAGAGATTTTGTTGGTGGAGGTGAAGGCATTGCTGGGGCTGGTCAAATAGGTAGAAGAAATGCAGAAAATGTAGCTGCCTGGTTGGAGGTGCTGGCAGCTCAACTTGAAGATCATGTTGGACGGATGTTTGGTAGACCGAATGGTGTTGGAATTATAGAATTTTTTCCGTTTGATATGCTTGTACGCATACAGGTCCCTGTGTTTCGTTTACTTGAAAATTCATTTTCTGTTCTTTTCAGGAACACGATTTTCCTTATTGTTGTAATTTTTATCCCCCTTTCCTTGGGACGAGTTTTCTCTCTGCATCTATTATGGCTCTTCTCCTCTGCTACAATTCCTGCTTTATCATCAGTCATTCCACCAACTCAAACTCATGCCTTAGCGAATAATGCATTAGGCGCTGATGCAAATTCATCGTTGGAAAGTCGTAGAGATGACATGCAAAACCAGGTAACAGCGGTGGTTGCGGGGATGTTAAAAGAAGACTCGACTGGACTGGAAGATGTCTCAAATATAATTAGCAAAACACTTTCAGCAAACCTGTTTAAAGGAGAAATTATCAGAACATCTCACTTGTCTAATGAGATGACTCTTGCCATAGGTTACATGTTTATACTATTGTTCTTCTTGTTTTGCCTTGGGCCACTTTTCTTGATTCATTATTCTCGAGGTCAGCGATTGAACTGGGGGAGGTTATTTCATATTGCTTATATAGCAGAGGCAGTCCTGTCCATTATAAGAAAATTCTGTGCAGTCTTAAGGCATTTTATGACTATGGCTAAGGTTGCTTTCATTCTGGTGATTAAGTTTGGGTTTTTCCCTTTGATATGTGGCTGTTGGTTGGATATTTGCACCTTAAGGGTGTTTGGGAAGACAATTGTTCAGAGGGTTGCATTCTTTTTAGAGGATCCTGCAGCAAGCTCCTTCTATCATTGGATCGCTGGAATTCTCTACATGCTACAATTCAGTTTTTCGATGAATCTTCTTCAAGGGGTCTTGCATAATGGAGTCTTGAACTTTCTTCAAAATCTAGCAGATCCCATTTACATTTTGTTCCACAGTTTGGTTGAAGACCCAGTGCACAAGCATGCTGGCAACATTCTTTTGGCTGTTGGTATTCATGGTAGCTTGGTTGTGATGCTGTTCTTTTTACCTGTCAGATTAGCCGTGCTGTTTGTACCTTCTTTATTTCCACTTGATCTTTCTTTGTCAGATCCACTTACAACCAGGTTTCTGTTTCATATCTGCATCCCATGGGCTACTCGTTATTTTAAGCTGCGAGCAACGGTTAAAACCCTTCTGTGCCAGTGGTTTACTGTTGTTGGCCGGGAACTTGATTTAACTGATGTCTTACTGCCTAGACCTGAGGGCAATGGCATGGAGGAAAATGCGGATGTAGAGCCAGAGCAGCAGCAAGGACAACATGATAGACAACTACATGAAGAAGTTGGGCAACGAAATAGGGATCTAGGTGCACTTGCAAGTGCTGAAGATTCAAATTTAGGCATATGGGCATCTGGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGAGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACTCTGCTTCTATCTAACTTGGTCTTGATTGTTGTACCAATTTCACTTGGACGTGCGCTCTTTAATGCTATCCCTCTTCTCCCACTAACTCGTGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTGGATCCAGGTATGTTGTACAACATGTCCAAACAGGAAGAGCTGGGGTTCTTTTAAAACAAATTTGGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTTACACCAATACGGGTGCCGTTGGATGAAAGCCCAGTGTTTATCTTATATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGTTTGAGAGGGTGCTAAACGATGGTTTCTCCCAGTTGCAAGGCCTCTGGGTGATGTCGGAAATTATAATTCCGATCATGATGAAGCTGCTGACAGCTCTCTGTGTTCCTTACATGTTTTCCAGAGGGTTATTCCCCATGCTTGGGTATCCATTATTGGTCAATTCAGCTGTCCACCGTTTTGCCTGGGTGGGCTGCCTTGCCTCTATTTTCATGTGCTCTTGTGCTAAAAGAATCCATGCCTTGTTCATTAGGATGCATAATGCCATTTGGAATGAGCGTTATCTGATTGGCCAGAGACTGCATAACTTTAAAGAAGTTTCTGGAAGAGATGCAAAGCAAGGCTAA 3105 0.4245 MEIAGPPLASDSEDRNEEDEDVCRICRNSGDSDNPLYYPCACRGSIKFVHEDCLLQWLDRSKTRRCEVCRHMFLFSPIYAEDAPARLPLREFITVITFKVFDVLQIFLHSAFSFSVYFLLISFGTYWIWQLAFVRSLSEAQKLFSSHISTKTIAINCFHGYLLSGIIKFVFHGFTFLRDFFIHLWDLRRQNLEGENGGRDGVHAARRPPDNADRDFVGGGEGIAGAGQIGRRNAENVAAWLEVLAAQLEDHVGRMFGRPNGVGIIEFFPFDMLVRIQVPVFRLLENSFSVLFRNTIFLIVVIFIPLSLGRVFSLHLLWLFSSATIPALSSVIPPTQTHALANNALGADANSSLESRRDDMQNQVTAVVAGMLKEDSTGLEDVSNIISKTLSANLFKGEIIRTSHLSNEMTLAIGYMFILLFFLFCLGPLFLIHYSRGQRLNWGRLFHIAYIAEAVLSIIRKFCAVLRHFMTMAKVAFILVIKFGFFPLICGCWLDICTLRVFGKTIVQRVAFFLEDPAASSFYHWIAGILYMLQFSFSMNLLQGVLHNGVLNFLQNLADPIYILFHSLVEDPVHKHAGNILLAVGIHGSLVVMLFFLPVRLAVLFVPSLFPLDLSLSDPLTTRFLFHICIPWATRYFKLRATVKTLLCQWFTVVGRELDLTDVLLPRPEGNGMEENADVEPEQQQGQHDRQLHEEVGQRNRDLGALASAEDSNLGIWASGNSDVEEKNGDEQADSEYHLFLRILLLLVLAWITLLLSNLVLIVVPISLGRALFNAIPLLPLTRGIKFPLFSVTLDIKFNDIYAFILGNCIIRTVVTGSRYVVQHVQTGRAGVLLKQIWKWCGIALKSSALLSIWIFVIPVLIGLLFELVVVTPIRVPLDESPVFILYEDWLLGLIFLKFWTSLVLLDDEELFVDRSWRVKFERVLNDGFSQLQGLWVMSEIIIPIMMKLLTALCVPYMFSRGLFPMLGYPLLVNSAVHRFAWVGCLASIFMCSCAKRIHALFIRMHNAIWNERYLIGQRLHNFKEVSGRDAKQG* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1215 1034 PANTHER SSM4 PROTEIN 16 1025 - -
Vvi7g1215 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 80 IPR013083 -
Vvi7g1215 1034 ProSiteProfiles Zinc finger RING-type profile. 23 70 IPR001841 -
Vvi7g1215 1034 SMART ringv_2 22 70 IPR011016 GO:0008270
Vvi7g1215 1034 SUPERFAMILY RING/U-box 17 73 - -
Vvi7g1215 1034 MobiDBLite consensus disorder prediction 671 694 - -
Vvi7g1215 1034 Pfam RING-variant domain 23 69 IPR011016 GO:0008270
Vvi7g1215 1034 ProSiteProfiles Zinc finger RING-CH-type profile. 15 76 IPR011016 GO:0008270
Vvi7g1215 1034 FunFam Probable E3 ubiquitin ligase SUD1 8 81 - -
Vvi7g1215 1034 CDD RING_CH-C4HC3_MARCH6 22 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1215 Vvi-Chr7 16448846 16459311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1215 7 128 C3H Transcription Factor Family AT2G22120 28.571 4.55e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1215 K10661 - vvi:100252430 2000.71