Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1214 ATGTGGGATCTCAACGACTCGCCTGATCAGAGGAGGGACGATGAATCGGAAGGCTGTTCTTCACAGAAGACCTCGGTGGACTCCATCGACGACAAGGGCAAAAGGGTCGGATCGGTTTCCAACGAGAATTCGAGCTCGTCAGCTGTAGTAATCGAGGACGGATCCGATGAAGAAGACGGAGAGAGGGGTCAGAGGAAGCGAAGCAGTAAAATATTCGGCTTCTCAGTGACCCATGAAGATGAGGGTGAGCCACCGGTTACCCGGCAGTTTTTTCCGATGGAGGAGTCGGAAATGGGGACTACTTCCTGCGGTGGTGCTGCGGCCTTCCCTCGAGCTCACTGGGTTGGTGTCAAATTCTGCCAGTCGGAGCCACTCAACACCGCAGGCGTTGCCACCGCCAAGTCACTGGAGGCGTCTCAGCCCTTGAAGAAGAGCCGCCGTGGCCCCAGGTCTAGAAGCTCCCAGTACCGCGGCGTTACCTTTTACCGGAGAACTGGCCGGTGGGAGTCCCACATATGGGACTGTGGAAAACAAGTTTATTTAGGTGGATTTGACACCGCACATGCAGCTGCTCGCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAGATGGGCAATCTAACCAAGGAAGAGTTTGTGCATGTCCTTCGCCGACAAAGTACTGGTTTTCCGAGAGGAAGCTCCAAGTATAGAGGTGTAACCTTACACAAGTGCGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGCAAAAAGTATGTGTACTTGGGCCTGTTCGATACAGAAATTGAAGCTGCTAGGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCGGTAATGCTGCAGATCACAATCTCGATTTGAGCTTGGGTGGCTCCGCATCCAAGCAGAACAATCTGGAATTGGGGGATGACAGCCAAGTTGTTACAATGGATCAGCATTCGGTGGGGATGTCATTTGAAGCTGATTGGCGGAGTCGGGGCTTCAGACCTAAGCAGGAGGCGTGTAAAAGCGATGGGGATGCCCTCCGGAGAAATGGATATAATGAAATGGAAACCATGCAGCTTCTGAGCCACACCCACCTACAATCGCCAGCGGCATTAAAGCCAGGTGAAATGTACAGATATGGGCAATTCAGAAGAGCTGGAGAAACCCAGATGCTTCATATACTTCCGCCACAGCTCAGCTCACCAAATTATCAGATTCAGTTTCCAAGCAGCAGTAACGGAGGCCGAATTGCTGTCAACGGAGGAGATCTCTCTCTGGCCACAAACCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGA 1524 0.5092 MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGAAAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1214 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 340 - -
Vvi7g1214 507 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 MobiDBLite consensus disorder prediction 1 20 - -
Vvi7g1214 507 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
Vvi7g1214 507 MobiDBLite consensus disorder prediction 58 85 - -
Vvi7g1214 507 MobiDBLite consensus disorder prediction 134 155 - -
Vvi7g1214 507 CDD AP2 155 210 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Vvi7g1214 507 MobiDBLite consensus disorder prediction 1 85 - -
Vvi7g1214 507 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Vvi7g1214 507 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Vvi7g1214 507 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 SUPERFAMILY DNA-binding domain 246 306 IPR016177 GO:0003677
Vvi7g1214 507 FunFam AP2-like ethylene-responsive transcription factor 246 306 - -
Vvi7g1214 507 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Vvi7g1214 507 Pfam AP2 domain 246 295 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1214 Vvi-Chr7 16437460 16440100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1214 1 335 AP2-EREBP Transcription Factor Family AT4G36920 70.317 5.99e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi7g1214 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1214 K09284 - vvi:100268051 991.875