Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1213 ATGGCACAGGTTCAGGTCCAGGCACAGGCTCAGCCTCCAGTTTCTGCTGCAAATGGAGGGGCTAGCAATGGTGGTGGAAACCAGTTCGTGTCGACGTCGCTATACGTCGGTGACCTAGAATCAAACGTCACCGACTCGCATCTCTATGATTTGTTTGGTCAGCTGGGTCCGGTGGTGTCCGTTCGTGTCTGCAGGGACTTGAGTACCCGGCGGTCTCTTGGTTACGGTTATGTCAACTATGGCAACACCCAAGATGCTGCTCGGGCATTGGATATGTTGAACTTCACTCCTCTCAATGGGAAGCCAATTAGGATTATGTATTCTTTTCGAGATCCTAGTATTCGTAGAAGTGGGACCGCTAATATTTTTATCAAGAATTTGGATAAGGCAATTGACAACAAAGCACTCTATGATACATTTTCTACATTTGGGGCTATTCTATCATGCAAGATAGCTACTGACGCATCTGGTCAGTCAAAAGGATATGGTTTTGTACAATTTGATAATGAGGAGTCTGCTAAAAATGCTACAGACAAGCTGAATGGCATGTTACTGAATGATAAACAAGTTTATGTTGGACCCTTTGTACGTAAACAGGAAAGGGAGTCTGCTACAAATAAGACAAAATTCAACAATGTCTATGTAAAGAATTTGCTAGAATCAACAACTGATGAAGATCTGAAGAATATATTTGGTGAATATGGACCGATTACTAGTGCTGTAGTGATGCAAGATGGAGATGGAAAATCTAAATGCTTTGGATTTGTGAACTTTGAGAATGCAGATGATGCTGCTCGATCTGTCGAGGCTCTCAATGGAAAGAAGTTTGATGATAAAGAGTGGTATGTTGGGAAAGCCCAGAAAAAAACTGAAAGAGAGGTTGAACTGAAAGGACGGTTTGAGCAGAGTTTGAAGGAGGCTGTAGACAAATTTCAAGGACTGAATTTATATGTAAAAAACCTAGATGATAGCATTGCTGATGATAAATTAAGGGAATTATTCTCAGAATTTGGGACTATTACTTCATGCAAGGTTATGCGTGACCCTAATGGTATTAGTAGAGGATCGGGTTTTGTTGCCTTCTCGACTGCAGAAGAAGCATCCCGAGCGCTTGCGGACATGAATGGTAAAATGGTTGCTAGCAAACCCCTTTATGTTGCACTTGCACAGCGGAAAGAAGATAGGAGAGCAAGGTTGCAGGCACAATTTTCACAAATGCGTCCAGCTGCAATGGCACCTTCAGTAGGCCCTCGAATGTCCATGTATCCCCCTGGTGCTCCAGGTCTTGGACAACAACTATTCTATGGTCAAGGCCCCCCAGCTCTTATCCCTCCCCAACCTGGATTTGGGTACCAGCACCAACTAGTTCCTGGGATGAGACCTGGTGCAGCTCCCATGCCAAATTTCTTTGTTCCTATGGTTCAGCCGGGTCAGCCAAATCAGCGGCCAGGAGGTCGTCGTTCTGGAACAGGGCCAGTGCAACAAACCCAGCAACCACTACCACTAATGCAGCAGCAGATGCTACCCAGGGGACGTGTCTACCGTTATCCCCCTGGACGTAACATGGCTGATGTTCCCATTCCTGGTGTTCCTGGAGGCATGCTTTCTGCTCCTTATGACATGGCTGGAATGCCATTCCGTGATGCTGCAGTCTCACAACCTATGCCGATTGGGGCACTGGCTACTGCCCTTGCAAATGCACCACCTGATCAGCAGAGGACATTGTTGGGTGAGAATCTGTACCCACTTGTGGATCAGCTGGAACATGAAATGGCAGCTAAGGTGACAGGCATGCTACTAGAGATGGACCAGACTGAGGTTTTGCATTTGCTAGAATCACCGGAAGCTTTAAAAGCAAAAGTTGCTGAGGCTATGGAAGTTCTGAGGAATGTTGCTCAGCAACAGGCGAACAACCCAACGGATCGAATGGCCTCACTGTCGCTAAATGACACTCTTACTTCCTGA 1965 0.4606 MAQVQVQAQAQPPVSAANGGASNGGGNQFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQPGFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRSGTGPVQQTQQPLPLMQQQMLPRGRVYRYPPGRNMADVPIPGVPGGMLSAPYDMAGMPFRDAAVSQPMPIGALATALANAPPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANNPTDRMASLSLNDTLTS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1213 654 SUPERFAMILY PABC (PABP) domain 497 646 IPR036053 GO:0003723
Vvi7g1213 654 MobiDBLite consensus disorder prediction 481 498 - -
Vvi7g1213 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 629 IPR006515 GO:0003723
Vvi7g1213 654 FunFam Polyadenylate-binding protein 18 117 - -
Vvi7g1213 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723
Vvi7g1213 654 SUPERFAMILY RNA-binding domain, RBD 31 201 IPR035979 GO:0003676
Vvi7g1213 654 PANTHER RNA BINDING PROTEIN 29 94 - -
Vvi7g1213 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Vvi7g1213 654 Gene3D - 552 635 - -
Vvi7g1213 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Vvi7g1213 654 SMART rrm2_1 315 387 IPR003954 GO:0003676
Vvi7g1213 654 SMART rrm2_1 212 284 IPR003954 GO:0003676
Vvi7g1213 654 SMART rrm2_1 121 193 IPR003954 GO:0003676
Vvi7g1213 654 SMART rrm2_1 33 106 IPR003954 GO:0003676
Vvi7g1213 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Vvi7g1213 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Vvi7g1213 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 384 IPR000504 GO:0003723
Vvi7g1213 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vvi7g1213 654 Pfam Poly-adenylate binding protein, unique domain 564 628 IPR002004 GO:0003723
Vvi7g1213 654 SMART rrm1_1 315 387 IPR000504 GO:0003723
Vvi7g1213 654 SMART rrm1_1 212 284 IPR000504 GO:0003723
Vvi7g1213 654 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vvi7g1213 654 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vvi7g1213 654 Gene3D - 201 300 IPR012677 -
Vvi7g1213 654 Gene3D - 301 404 IPR012677 -
Vvi7g1213 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vvi7g1213 654 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g1213 654 FunFam Polyadenylate-binding protein 202 296 - -
Vvi7g1213 654 CDD RRM3_I_PABPs 210 289 - -
Vvi7g1213 654 SMART poly_2 568 631 IPR002004 GO:0003723
Vvi7g1213 654 Gene3D - 109 200 IPR012677 -
Vvi7g1213 654 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676
Vvi7g1213 654 FunFam Polyadenylate-binding protein 552 634 - -
Vvi7g1213 654 CDD RRM4_I_PABPs 313 391 - -
Vvi7g1213 654 Gene3D - 1 107 IPR012677 -
Vvi7g1213 654 MobiDBLite consensus disorder prediction 474 498 - -
Vvi7g1213 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 556 633 IPR002004 GO:0003723
Vvi7g1213 654 FunFam Polyadenylate-binding protein 297 402 - -
Vvi7g1213 654 CDD RRM2_I_PABPs 118 194 IPR045305 -
Vvi7g1213 654 CDD RRM1_I_PABPs 33 112 IPR034364 -
Vvi7g1213 654 FunFam Polyadenylate-binding protein 118 201 - -
Vvi7g1213 654 MobiDBLite consensus disorder prediction 633 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1213 Vvi-Chr7 16419782 16426123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1213 1 649 Eukaryotic Initiation Factors Gene Family AT4G34110 68.960 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1213 K13126 - vvi:100262903 1257.66