Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1211 ATGGAGGGAGGACAGGAGTGTTGTTCGAGCAGAGAGACGAGGAAGAGGGTGACGGGGCAAGGTGAGAAGCGGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTAGAGAACCCAACAAGAGGTCACGCATATGGCTGGGCTCCTACTCCACACCGGTGGCCGCTGCCCGTGCTTACGACACCGCCGTCTTTCACCTGAGAGGACCGTCGGCGAGGCTCAACTTCCCGGAGTACCTGGTGGGAGAAGGTGGGCTCCACGACACCTCCGCTGCGTCTATACGCAAAAAAGCTACGGAGGTGGGGGCGACAGTAGACGCTATAGAATGTGCCAGGACGGCTTCCAACCAATACAAATCCTGCGCCTTCTCTGAGAAACCCGACCTCAATAAAGAACCGGATCCTGAAAATTCGGATGTTGACGATGACCACCACTATCATCTCTGA 459 0.5621 MEGGQECCSSRETRKRVTGQGEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPEYLVGEGGLHDTSAASIRKKATEVGATVDAIECARTASNQYKSCAFSEKPDLNKEPDPENSDVDDDHHYHL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1211 152 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vvi7g1211 152 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 MobiDBLite consensus disorder prediction 129 152 - -
Vvi7g1211 152 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vvi7g1211 152 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g1211 152 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vvi7g1211 152 MobiDBLite consensus disorder prediction 7 21 - -
Vvi7g1211 152 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vvi7g1211 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 143 - -
Vvi7g1211 152 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1211 Vvi-Chr7 16404302 16404760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1211 13 148 AP2-EREBP Transcription Factor Family AT2G23340 62.179 4.90e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi7g1211 AP2 2.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1211 K09286 - vvi:100233129 319.316