Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1205 ATGCCTACTGCTAGCAACTCCCTTCAACTCTTCTCTTTCCTCCTCCTTTCTCTTCTCTTCTCCTTCGCCGTTGCCGCCGCCGCCGCTACTGCTGCACCGTCGGTGAGCTCTCTGCTGCCAAGCGACGCCGTTTCGCTTCTGTCTTTCAAGGCCAAGGCGGACTTGGATAACAAGCTTCTGTACACGCTGAATGAGCGCTTTGACTACTGTCAGTGGCGGGGCGTGAAGTGTGTGCAAGGCAGGGTTGTGCGTTTCGACACTCAAGGGTTTGGTCTCAGAGGCTACTTCGCTCCCAACACCTTGACTCGTCTTGATCAGCTCCGAGTTCTGAGCCTCCATAATAACTCGCTCTCCGGACCCATTCCTGACCTGGCCGCACTCGTCAACCTCAAGTCGCTGTTTTTGGACCACAACTCCTTTTCTGGGTATTTCCCGCCGTCTATTCTCTCCCTTCACCGGCTTCGTATTCTTGATCTTTCTCACAACAATCTAACCGGTTTAATCCCGGTGGAATTGTCTGGGTTGGACCGGCTCAGCTCTCTCCGACTTGAATGGAACCAGTTCAACGGGACAGTTCCTCCGTTGAACCAGTCCTCGCTTCTAATCTTCAATGTCTCCGGCAACAACCTCACCGGGCCAATACCGGTAACCCCTACTCTCTCCCGCTTTGGGGTTTCTTCGTTTTCATGGAATCCTAATCTATGCGGTGAGATTATAAACAAGCAGTGCAGGTCATCTTCCCCATTTTTCGAGTCCCCCGGTGTCCGTGCCGGTGCCGCTCCGTCACCGACACCACTCTGGCAGAGCACACAGGCGCAAGGGGTTGTTCTATCGACTCCATCTTCAAAGAAACACGTAGGAACCCCCTTAATTCTAGGGTTTGTAATAGGGATGGGAGTTCTTATTGTGTCCCTTGTTTGCCTGTTTGCGTTGGTATGCAAACACAGTAGAAAAACCCCAAAATCAAATCCAATGCCGGAACCAAAAGCAGAAGCAGAAGCAGAACCAGAGCCAGTAATGGCGGCTTTAGACATGTGCAATACGAATACAGCTGAAATGCGCCAACAAGAAAACGAAATGGAGGGGGAGGCAAAGAGGGTTCAACAAGTAGTTGGGAAAAGTGGGAACCTGGTGTTCTGCGTAGGTGAACCACAGTTGTATAACCTGGACCAGCTAATGAGGGCTTCAGCAGAAATGCTTGGGCGGGGTTCAATAGGAACTACATATAAAGCCGTGTTGGATAATCAATTGATCGTTTCAGTGAAGAGGCTTGATGCAAGCAAGACAGCCATTACAAGCGGTGAAGTGTTTGAGCGGCACATGGAGTCTGTGGGAGGGCTTCGCCACCCAAATTTGGTTCCAATTAGAGCGTATTTTCAGGCCAAGGAGGAAAGGCTTGTCATCTATGATTATCAACCGAATGGGAGTCTCTTCTCTCTCATTCACGGTTCAAGATCAACCAGGGCAAAGCCTCTCCACTGGACATCATGCTTAAAGATAGCAGAGGATGTGGCTCAGGGGCTTGCATACATCCACCAAGCATCAAAGCTCGTGCATGGAAACCTAAAGTCCTCCAATGTTCTCCTCGGGGCTGACTTTGAGGCCTGCATCACAGACTACTGCCTTGCCGCTCTTGCAGACCTCCCTGCTAATGAGAATCCTGACTCTGCAGGGTATAGAGCCCCTGAGACACGGAAGTCCAGCCGCCGAGCCACTGCCAAGTCTGATGTTTATGCATTTGGCGTTCTCTTATTAGAGCTTCTGTCCGGGAAACCTCCATCCCAGCATCCATTCCTTGCGCCTACGGACATGTCAGGTTGGGTGAGAGCAATGAGGGATGATGATGGTGGTGAAGATAACCGGCTGGCACTGCTTGTTGAGGTTGCAAGTGTTTGTAGCTTGACTTCGCCTGAGCAGAGGCCGGCAATGTGGCAAGTGTCGAAGATGATACAGGAGATAAAGAACAGTATAATGGTAGAGGATAATTCTGGAGGTGCTTCTTTTGGATTTTCATAG 2016 0.5069 MPTASNSLQLFSFLLLSLLFSFAVAAAAATAAPSVSSLLPSDAVSLLSFKAKADLDNKLLYTLNERFDYCQWRGVKCVQGRVVRFDTQGFGLRGYFAPNTLTRLDQLRVLSLHNNSLSGPIPDLAALVNLKSLFLDHNSFSGYFPPSILSLHRLRILDLSHNNLTGLIPVELSGLDRLSSLRLEWNQFNGTVPPLNQSSLLIFNVSGNNLTGPIPVTPTLSRFGVSSFSWNPNLCGEIINKQCRSSSPFFESPGVRAGAAPSPTPLWQSTQAQGVVLSTPSSKKHVGTPLILGFVIGMGVLIVSLVCLFALVCKHSRKTPKSNPMPEPKAEAEAEPEPVMAALDMCNTNTAEMRQQENEMEGEAKRVQQVVGKSGNLVFCVGEPQLYNLDQLMRASAEMLGRGSIGTTYKAVLDNQLIVSVKRLDASKTAITSGEVFERHMESVGGLRHPNLVPIRAYFQAKEERLVIYDYQPNGSLFSLIHGSRSTRAKPLHWTSCLKIAEDVAQGLAYIHQASKLVHGNLKSSNVLLGADFEACITDYCLAALADLPANENPDSAGYRAPETRKSSRRATAKSDVYAFGVLLLELLSGKPPSQHPFLAPTDMSGWVRAMRDDDGGEDNRLALLVEVASVCSLTSPEQRPAMWQVSKMIQEIKNSIMVEDNSGGASFGFS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1205 671 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Vvi7g1205 671 ProSiteProfiles Protein kinase domain profile. 394 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1205 671 SUPERFAMILY Protein kinase-like (PK-like) 398 654 IPR011009 -
Vvi7g1205 671 FunFam Leucine-rich repeat receptor-like protein kinase 153 245 - -
Vvi7g1205 671 SUPERFAMILY L domain-like 41 236 - -
Vvi7g1205 671 FunFam Probable inactive receptor kinase At5g67200 41 151 - -
Vvi7g1205 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 654 IPR046959 -
Vvi7g1205 671 Gene3D Ribonuclease Inhibitor 40 196 IPR032675 -
Vvi7g1205 671 Gene3D Ribonuclease Inhibitor 197 245 IPR032675 -
Vvi7g1205 671 Gene3D Transferase(Phosphotransferase) domain 1 473 665 - -
Vvi7g1205 671 Gene3D Phosphorylase Kinase; domain 1 387 471 - -
Vvi7g1205 671 ProSiteProfiles Leucine-rich repeat profile. 153 174 IPR001611 GO:0005515
Vvi7g1205 671 Pfam Protein kinase domain 398 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1205 671 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1205 Vvi-Chr7 16342286 16345443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1205 24 662 Receptor kinase-like Gene Family AT3G50230 55.842 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi7g1205 Pkinase 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1205 - - vvi:100264683 1244.18