LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g1195	ATGGACCCAGACTCTGCTAAACCATCATCTCAGCAACCTGCTAATGCAGCTGCTGCTGAGTCTCCAACTCCTGCTGTCGCTACACAAGATAGGTCTACACATGACTCACCGCCATTGTTATCTGCTTCTGGTATATCGTCATGGGCCAAAAATCTGAAAATTCCACAGCCCTTAGCAGCAACACAAGATGATTCGCAAACTGGAGATGGAGGGAAGTCAACCTTTTCACGTTTCACCAGTGGTTTTGGGTTGCGGCTGTCTCCAGCAGCACCTATGCCAGCTGAGAGTGTTGTAAGCACCTCCACAACTACACAACCTGGTGTTCTCGAATCCTTCACAAAAGGGTTAGTTGACTCATCAAAGAGTGCAGTGAAGGCTGTGCAGGTCAAGGCACGCCATATTGTCTCTCAAAACAAACGAAGATACCAGGAAGGAGAATTTGATTTGGATATGACTTACATCACTGAGAACATAATTGCAATGGGGTTTCCTGCTGGTGATATGAGCTCTGGGTTTTTAGGATTTATTGAGGGATTTTATCGAAATCACATGGAAGAAGTGATCAAGTTTTTTGAAACTCATCACAAGGGCAAATATAAGGTATACAATCTTTGTTCAGAGCGGCTCTACGATGCATCACTCTTTGAGGGAAAGGTTGCATCCTTCCCCTTTGATGACCATAACTGCCCCCCTATTCAACTCATAACTTCATTTTGTCAAAGTGCATACTCATGGTTGAAGCAAGATATTGAGAATGTGGTGGTTGTTCATTGCAAAGCTGGGATGGCAAGGACAGGACTAATGCTTTCAAGCCTTCTTTTATTCCTAAAGTTCTTCCCGACAGCTGAGGAGTCCATCAACTATTACAACCAAAAAAGATGCTTAGATGGGAAGGGTCTAGTTCTCCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGCATCTTAACACACTTCAATGGTCAAAATCCTCCTGGACGCAGGTGCATGCTTAGAGGGTTTCGGCTTCATAGGTGCCCTTCCTGGTTTAGGCCCTCCATTACAGTCTCTGATCATAATGGAATTTTATTCTCAACAAGAAAGCATCCAAAAACCAAGGATCTAATGCCAGAAGACTTTTGGATCAGTGCAGCAAAGAAAGGGATTGTGGTCTTTGCTCTACCGAGGGAGCCTGGTCTGGCAGAGTTGGCTGGAGACTTCAAGTTCCATTTTCATGACAGTGAAGGAGATTTTTACTGTTGGTTAAATACGACAATGACAGAAAACAGAAAAATTTTGAGCACCTATGATCTTGATGGATTCGAAAAGAGGAAACTGCCTTCACCTGGATTCCAGGTTGAAGTTGTGATGATAGATTATGACGGAACCATTCAGACAAGGTTTAAATCTGATTCAAGCAGGAACGGGTCTGATGGAAACTCAGGCTATGTTCCTGCCCCTAGCGGTGGTGTTGCAGCTACTTCCAACCAAAGTAAAGTTTCTGAAAGCCAAGACAATGATGATGTATTCTCAGACAGTGAGGGAGAGGAGACTGAATCTTCAACCAGAAAGCAAGCTCAAACAACTTCGGGCACTGGACATGGGGCACCTGGTCCCAAATCTGGTTCCACAGTAGAGCAAATTGCGGGTATAAAACATGGAACTGAACATCTGTCGCTGGTAAGTGAGCAGCCCTCACAGATCAATCCTTCCAAGGAACCAAAAAGTGATGGAGCCCTCCAAGAGGTAAGTGATTTCAAGGCAATTGCAGCTGATGCTTCAGTTTTCTCTTTTGGAGATGAAGAGGACTATGAGAGTGAGTAA	1803	0.442	MDPDSAKPSSQQPANAAAAESPTPAVATQDRSTHDSPPLLSASGISSWAKNLKIPQPLAATQDDSQTGDGGKSTFSRFTSGFGLRLSPAAPMPAESVVSTSTTTQPGVLESFTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGDMSSGFLGFIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITSFCQSAYSWLKQDIENVVVVHCKAGMARTGLMLSSLLLFLKFFPTAEESINYYNQKRCLDGKGLVLPSQIRYVKYFERILTHFNGQNPPGRRCMLRGFRLHRCPSWFRPSITVSDHNGILFSTRKHPKTKDLMPEDFWISAAKKGIVVFALPREPGLAELAGDFKFHFHDSEGDFYCWLNTTMTENRKILSTYDLDGFEKRKLPSPGFQVEVVMIDYDGTIQTRFKSDSSRNGSDGNSGYVPAPSGGVAATSNQSKVSESQDNDDVFSDSEGEETESSTRKQAQTTSGTGHGAPGPKSGSTVEQIAGIKHGTEHLSLVSEQPSQINPSKEPKSDGALQEVSDFKAIAADASVFSFGDEEDYESE*	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	25	44	-	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	460	573	-	-
	Vvi7g1195	600	ProSitePatterns	Tyrosine specific protein phosphatases active site.	256	266	IPR016130	GO:0016311\|GO:0016791
	Vvi7g1195	600	ProSiteProfiles	C2 tensin-type domain profile.	326	453	IPR014020	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	483	497	-	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	1	44	-	-
	Vvi7g1195	600	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	254	293	IPR000387	GO:0016311\|GO:0016791
	Vvi7g1195	600	SMART	PTEN_C2_2	324	452	IPR014020	-
	Vvi7g1195	600	ProSiteProfiles	Phosphatase tensin-type domain profile.	140	319	IPR029023	-
	Vvi7g1195	600	Gene3D	Protein tyrosine phosphatase superfamily	125	322	IPR029021	-
	Vvi7g1195	600	CDD	PTP_PTEN	150	315	IPR045101	GO:0016791
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	552	567	-	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	1	18	-	-
	Vvi7g1195	600	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	153	321	IPR029021	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	460	475	-	-
	Vvi7g1195	600	MobiDBLite	consensus disorder prediction	515	530	-	-
	Vvi7g1195	600	FunFam	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2	125	322	-	-
	Vvi7g1195	600	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	117	546	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g1195	Vvi-Chr7	16284476	16290879	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g1195	23	600	Protein tyrosine phosphatase (PTP) family	AT3G19420	64.358	0.0	778

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g1195	K01110		-	vvi:100259289	1171.38