Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1194 ATGGATAACACACTCGTCAACGCTGAGAAAGAGGTTCTCGTTGAAATGGTGAAATTGGCTCAGAAACGAGGATTGGAGGGCTCCAAAGGAAGCTGGAAGGATTTTCTGAGTACTTACGATAGGAAGCTTGGGCCAAGCTTGAGCGATCCATCGAGGAGGCCTGTTGATACATTGGTGTCTTTTCTGAAGACATTCTCCAAAGAGGAAGACCTAAAGTTTTTTGCAAAAATATTGCAGTGTTATGCAAACCGCAAGGTAGTTGAGGAATTCAAAACGAAGTCTCATGGAAAGGAGTCCCCCGAGCAGAGGCTGATCCGCTTAACTCTTGAACATCCGCAATACCCATTAGATTATTCATTCCCATCCCATGAAGAGGGGTGGATGGTTACAAAAATTCGTCAAAAGTTCAAGTTTACAAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGGTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGAACTGAGATTACTGGAGTCAGTGCAAAAGATTTTGATGAAACTACTTCCTCATTGGTAGATATACAGAGATCCATGAAGAAGCTATTATCACATGGAGCTGTTTTAGTTGGTCACAGTTTGCATAATGATCTGAAAGCACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAAGTCTATCTTGGGCTATGAAGTGCGTCAGAAGGATGCTCCGCACAATTGTCTAGATGATGCATCTGCTGCAATGAAACTTGTTCTTGCCAAGTTAGAGCAAGGGTTGGATGATGCTATTCCCTTTGTTCATGAAGATGTGCCTGAAAATGAAATGGCGAAGCTGCTTCTCCACAGGATACCAACTGATGTGCCCATTGAAGAGTTAAATAGAATTATTCCTGGGGAATTTACCATGGAACACCAGCCAAGGAAGAAAGTTCGAGGAGAATATTATTCTGCCCTTGCCATCTTTAGGAATTCACAAGAGGCATATGAAGCATTTGAAAACATTCGAGGGACCCAAGGAAAGGATTCATCTGGACGGTCACAGAAGTCCGTCTCATTTCAGCTCGGCACAGGAGCAACTGCTAGTCTATATGTTCGGAAAATGGCACATAATGATTCCCTTGGTCAAGTCTCATCAAGGAAGAGATCCCCCCAAGTTGAGGAGATCTCAGGTGACTCCAAGAAGTTAAAGACGGAGGAAAAAACAGGGGACAAGGAGATGATGGTAGACACAAATCAGTGTGAAGATCATATGAAAGAGATTGAAAGGTTGAAAGCAGTTCTGAGTCAAAGAGATAATGAAATATCCACCTTGCATAAGATCATAACTTCCCTTACAAGGAAACAAGGACTCTAA 1485 0.4202 MDNTLVNAEKEVLVEMVKLAQKRGLEGSKGSWKDFLSTYDRKLGPSLSDPSRRPVDTLVSFLKTFSKEEDLKFFAKILQCYANRKVVEEFKTKSHGKESPEQRLIRLTLEHPQYPLDYSFPSHEEGWMVTKIRQKFKFTRSNAMLAVDCEMVLCEDGTEGLVRVCVVDRNLQVKLNELVKPHKAVVDYRTEITGVSAKDFDETTSSLVDIQRSMKKLLSHGAVLVGHSLHNDLKALKLDHARVIDTAFIYKYENQPINRRPSLNNLCKSILGYEVRQKDAPHNCLDDASAAMKLVLAKLEQGLDDAIPFVHEDVPENEMAKLLLHRIPTDVPIEELNRIIPGEFTMEHQPRKKVRGEYYSALAIFRNSQEAYEAFENIRGTQGKDSSGRSQKSVSFQLGTGATASLYVRKMAHNDSLGQVSSRKRSPQVEEISGDSKKLKTEEKTGDKEMMVDTNQCEDHMKEIERLKAVLSQRDNEISTLHKIITSLTRKQGL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1194 494 Coils Coil 457 477 - -
Vvi7g1194 494 Gene3D - 139 311 IPR036397 GO:0003676
Vvi7g1194 494 CDD REX1_like 145 296 IPR034922 -
Vvi7g1194 494 SUPERFAMILY Ribonuclease H-like 145 301 IPR012337 -
Vvi7g1194 494 SMART exoiiiendus 143 304 IPR013520 -
Vvi7g1194 494 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 308 IPR047021 GO:0004527
Vvi7g1194 494 MobiDBLite consensus disorder prediction 415 449 - -
Vvi7g1194 494 FunFam Small RNA degrading nuclease 3 139 313 - -
Vvi7g1194 494 MobiDBLite consensus disorder prediction 428 449 - -
Vvi7g1194 494 Pfam Exonuclease 146 294 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1194 Vvi-Chr7 16271688 16283158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1194 136 275 C2H2 Transcription Factor Family AT3G27970 30.675 2.90e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1194 K14570 - vvi:100254172 979.548