Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1188 ATGAAGTCAACAAGCGTTGGTCTCCATTTATGGTGGAGAATTCTTTCTTTTGTTCTTCTTTTGGTTCAGTCTTTTGGGATTAACAGAGATGGAATTCTCTTGCTCTCTCTCAAGTACTCTGTTCTCAGTGATCCTCTTTCAGCACTGGAAAGCTGGAACCACTACGACGAAACACCATGTTCATGGAAAGGCGTCAGGTGTTCTTCCCCAGGAATGCTCGACACCTGCTCTCGTGTCATCGCTTTGTCTCTCTCAAACTTTCAGCTTCTGGGTTCGATTCCAGATGATCTGGGCATGATCGAACACCTTCGGAATCTTGATCTCTCCAACAATGCTTTCAATGGGTCCCTTCCTCTATCACTCTTCAACGCGTCTGAGCTTCAGGTAATGGATTTGTCCAACAATTTGATCTCCGGTGAGCTTCCGGAGGTTGACGGAGGGTTAGCAAGTCTTCAATTGCTTAACCTCTCGGACAATGCCTTGGCGGGAAGGATACCAGACTACCTGAGTACTCTGAATAATCTTACTTCTGTTTCGTTGAAGAACAACTACTTTTCTGGTGGTCTACCTAGTGGCGTCGCTTCTATTGAAGTTTTAGATCTGTCTTCCAATCTGATTAACGGATCATTGCCTCCAGATTTTGGAGGGGAAAGTCTTGGCTATTTGAACATCTCTTACAATAGGCTTTCTGGGTCAATCCCACTGGAGTTTGCCCAGAATATCCCAGAAAGTGCAATCCTTGATCTCTCATTCAACAATCTCACCGGAGAAATTCCAGAAGCCAATGTTCTCTATAATCAGCAAACGAAATCTTTTTCCGGAAATACTGGTCTATGCGGGAAACCGCTCAAGGCTCCGTGTCCTATTCCTTCAACGCTTTACAATGCCACAGAACCAACCTCTCCACCAGCCATTGCAGCAATGCCCAAGACAATAGACTCAACCCCAGTGACCTCGCCCGGAACGACAAATGGGTCGCGGAAGCAAGATGAAAACGGGCTCAGACCAGCGACAATTGTCGGAATCGTCCTGGGGGACATTGTGGGAGTGGGAATTCTGGCTGTGATCTTCTTATACGTCTACCAATGGAAGAAAAAGAAGAATGTGGCAAATGCAATAAAGACGGAGAAAAACGAAACTAACTCAGCCAAGGACATTTGGTCATCGTCTTCGTCTTCGTCGGAGACCAGAGGAGTCACAGCATGGTCGTGCCTGCCAAAAAGAGGAGACGAAGAAGACAGCACCGAAACCACAGGCTCCGATGGCGAAGAAGAACAGACCATGCAAACCGGTCATAGCAATCAACGGCAGCAAGAACAGCAGAAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCTAGTGACCGTGGACGGTGAGAAAGAGCTTGAGCTAGAGACTCTCCTCAAGGCTTCGGCCTACATACTGGGCGCCACGGGTTCAAGCATAATGTACAAGGCTGTGCTCGAAGATGGCACCACTCTCGCAGTCCGAAGAATTGGCGAAAGCGGCGTGGAGAGGTTCAGAGACTTCGAGAACCAGGTAAAAGTCATAGCCAAGCTGGTGCACCCCAACCTGGTTCGCATCAGAGGCTTCTATTGGGGGGTCGATGAGAAGCTTGTCATCTACGATTTCGTCCCCAACGGCAGTCTCGCCAGTGCCCGTTACAGGAAAGTAGGCTCATCTCCTTGTCACATGCCATGGGAAGTCCGACTCAAAGTTGCCAAAGGTGCAGCCAGGGGCTTAACCTATCTCCACGACAAGAAGCATGTGCATGGAAATCTCAAGCCTAGCAACATCCTTCTGGGCATCGACATGGAGCCCAAAATCGGCGATTTTGGCCTGGAGAGGCTCGTCTCCGGCGAAACTAGCTACAAAGCTGGTGGATCGGCCCGGAATTTCGGGAGCAAGAGATCGACAGCCTCCCGCGACAGTTTCCAAGACATGCCAGTTGGGCCCAGCCCCAGCCCGAGTCCAAGCTCACTGGGCGTGTCCCCCTACCACGCCCCCGAGTCGCTCCGGAGCCTCAAGCCCAACCCGAAATGGGATGTGTTCTCATTTGGGGTCATACTGCTGGAGCTGCTCACTGGGAAGGTTATCGTCTCAGATGATTTGGGCCTTGGATTAGCGTCGGAGGACAAGGGCCGGGTTCTGAGAATGGCTGACGCGGCAATTCGAGCTGACCTGGAAGGCAAAGAGGATGCCCTGCTGGCCTGTTTCAAGTTAGGGTTCAGTTGCGTGTCGCCAGCCCCTCAAAAAAGACCATCCATGAAAGAAGCCGTCCAAGTTCTGGAGAAAATCCCGTCTTCTTCTTCGTCTTCTTCTTATTATGCCCACTAA 2346 0.5055 MKSTSVGLHLWWRILSFVLLLVQSFGINRDGILLLSLKYSVLSDPLSALESWNHYDETPCSWKGVRCSSPGMLDTCSRVIALSLSNFQLLGSIPDDLGMIEHLRNLDLSNNAFNGSLPLSLFNASELQVMDLSNNLISGELPEVDGGLASLQLLNLSDNALAGRIPDYLSTLNNLTSVSLKNNYFSGGLPSGVASIEVLDLSSNLINGSLPPDFGGESLGYLNISYNRLSGSIPLEFAQNIPESAILDLSFNNLTGEIPEANVLYNQQTKSFSGNTGLCGKPLKAPCPIPSTLYNATEPTSPPAIAAMPKTIDSTPVTSPGTTNGSRKQDENGLRPATIVGIVLGDIVGVGILAVIFLYVYQWKKKKNVANAIKTEKNETNSAKDIWSSSSSSSETRGVTAWSCLPKRGDEEDSTETTGSDGEEEQTMQTGHSNQRQQEQQKQGGGGGGGGGGGALVTVDGEKELELETLLKASAYILGATGSSIMYKAVLEDGTTLAVRRIGESGVERFRDFENQVKVIAKLVHPNLVRIRGFYWGVDEKLVIYDFVPNGSLASARYRKVGSSPCHMPWEVRLKVAKGAARGLTYLHDKKHVHGNLKPSNILLGIDMEPKIGDFGLERLVSGETSYKAGGSARNFGSKRSTASRDSFQDMPVGPSPSPSPSSLGVSPYHAPESLRSLKPNPKWDVFSFGVILLELLTGKVIVSDDLGLGLASEDKGRVLRMADAAIRADLEGKEDALLACFKLGFSCVSPAPQKRPSMKEAVQVLEKIPSSSSSSSYYAH* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1188 781 Pfam Protein kinase domain 478 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1188 781 Gene3D Phosphorylase Kinase; domain 1 459 547 - -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 382 400 - -
Vvi7g1188 781 FunFam Leucine-rich repeat receptor-like protein kinase 195 289 - -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 312 331 - -
Vvi7g1188 781 FunFam Leucine-rich repeat receptor-like protein kinase 27 191 - -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 378 457 - -
Vvi7g1188 781 Gene3D Transferase(Phosphotransferase) domain 1 548 779 - -
Vvi7g1188 781 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Vvi7g1188 781 ProSiteProfiles Protein kinase domain profile. 472 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1188 781 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 308 332 - -
Vvi7g1188 781 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Vvi7g1188 781 SUPERFAMILY Protein kinase-like (PK-like) 477 770 IPR011009 -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 628 672 - -
Vvi7g1188 781 Gene3D Ribonuclease Inhibitor 27 193 IPR032675 -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 628 653 - -
Vvi7g1188 781 MobiDBLite consensus disorder prediction 421 444 - -
Vvi7g1188 781 CDD STKc_IRAK 478 769 - -
Vvi7g1188 781 PANTHER OS05G0588300 PROTEIN 146 774 - -
Vvi7g1188 781 SUPERFAMILY L domain-like 35 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1188 Vvi-Chr7 16228544 16231247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1188 14 781 Receptor kinase-like Gene Family AT4G37250 58.249 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi7g1188 Pkinase 2.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1188 - - vvi:100261029 1427.92