Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1186 ATGGCTGCAACGAGAAAGGATGTGGATCGGATCAAGGGTCCGTGGAGCCCTGAGGAGGATGATGCTTTGCAGAAGCTTGTACAGAAGCATGGTCCCCGCAACTGGTCTTTGATTAGTAAATCCATTCCTGGGAGATCCGGGAAGTCGTGTCGGTTGAGGTGGTGCAACCAACTCTCCCCTCAGGTGGAGCACAGGGCGTTTACGTCGGAAGAGGATGACACTATTATGCGAGCCCATGCTCGGTTCGGCAACAAATGGGCCACCATCGCTCGTCTCCTATCGGGCCGCACCGATAACGCGATAAAGAACCATTGGAACTCCACTTTGAAGAGGAAGTGTTCCGCCATCACCGAAGACGGTAGCTTTGGAGGGGATTATCCACCCCACCCGTTGAAAAGATCGGTCAGCGCCGGAGCTGCTGCTCCGGTGTCGGGCCTTTATCTCAGCCCCAGCAGTCCCTGCGGATCTGACGTCAGCGATTCTAGTCTTCCCGTGGTGAGCTCATCACATGTGTACCGCCCCGTGGCGAGAACCGGCGGGATCATACCTCCCGAAACGACGTCGTCCTCAAACGACCCTCCAACTTCTCTCTCCCTCTCTCTTCCGGGGGTCGATTCGTGCGAGGTTTCCAACCGTGCACCGGAACCCAACCATGCACCGCCTGCAAACCCTATTCAGATGATACCTACGATGGCTCCTTTGCAGCAGATTCCGATGCACCAACACAACCAGCCAGCGACGGTGCCGGCTACAGTCCTCTCCCAGGGGGAGAAACCATTTATCCCCTTCAGTGCAGAGCTGTTAGCTGTGATGCAAGAGATGATAAGAAAGGAAGTGAGAAACTACATGGCAGGGCTTGAACAGAATGGGGTATGCTTGCAAGCAGATGGGATTAGGAACGCGGCAGTGAAGCGCATCGGCATCAGCAAGATCGAGTAG 939 0.5548 MAATRKDVDRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSAITEDGSFGGDYPPHPLKRSVSAGAAAPVSGLYLSPSSPCGSDVSDSSLPVVSSSHVYRPVARTGGIIPPETTSSSNDPPTSLSLSLPGVDSCEVSNRAPEPNHAPPANPIQMIPTMAPLQQIPMHQHNQPATVPATVLSQGEKPFIPFSAELLAVMQEMIRKEVRNYMAGLEQNGVCLQADGIRNAAVKRIGISKIE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1186 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Vvi7g1186 312 FunFam Transcription factor MYB44 66 112 - -
Vvi7g1186 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vvi7g1186 312 Gene3D - 65 121 - -
Vvi7g1186 312 PANTHER MYB PROTEIN-RELATED 12 205 - -
Vvi7g1186 312 Gene3D - 11 63 - -
Vvi7g1186 312 CDD SANT 14 56 IPR001005 -
Vvi7g1186 312 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vvi7g1186 312 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vvi7g1186 312 CDD SANT 66 109 IPR001005 -
Vvi7g1186 312 SMART sant 11 60 IPR001005 -
Vvi7g1186 312 SMART sant 63 111 IPR001005 -
Vvi7g1186 312 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Vvi7g1186 312 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Vvi7g1186 312 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vvi7g1186 312 MobiDBLite consensus disorder prediction 177 224 - -
Vvi7g1186 312 MobiDBLite consensus disorder prediction 182 205 - -
Vvi7g1186 312 FunFam MYB transcription factor 12 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1186 Vvi-Chr7 16208607 16209545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1186 4 312 MYB Transcription Factor Family AT4G37260 51.198 5.98e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g1186 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1186 K09422 - vvi:100233128 597.43