Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1185 ATGGAAACTCTCCCCTTTCGTGGAGTCCCTTCACTGAGTTGTGCAAGGAGACGAGTCAACAATTCGTTTGAGCCCTTCCACCATCGGACCCTCTTCTTTTATAATCTCTCTCTTCCCAAATCCCTCTTTCCTCCTCTCAATTTCCCTCTTCTTCCCCGCCACCGCGCTCTCCAATTCGTCGCCAAGGCGGAGGATTCTCATCACCACCACCACCACCCCCACAATGATCATCACCACGATGACCACCACCACCATCACGGCCACGGCCACGGCCACCACCATCATCATCATGGCAGTGGATCGACGCTGAGTAGAACGCAGGAATCTTTTCTTCGAATTGCGAAAGCGATTAGGTGGGCAGACTTGGCGGATTTCTTAAGGGAGAATCTGCATTTGTGCTGCTGTTCCACGGGTCTGTTTCTAGCGGCTGCGGCTTGCCCGTATTTGATTCCGAAGCCGGCCGTGAAGCCTCTACAGAATGCCTTCATTTTCGTTGCTTTTCCTCTCGTTGGGGTCTCAGCATCTCTTGATGCTCTTATTGATATTACTGGTGGAAAGGTAAACATTCATGTACTAATGGCTCTTGCAGCCTTCGCATCAGTATTTATGGGAAACCCATTGGAAGGTGGTTTACTTCTTGCAATGTTTAATCTGGCTCATATTGCTGAAGAGTATTTCACCAGCCGCTCAGTGGTGGATGTTAAGGAGTTGAAGGAAAATTATCCAGATTTTGCTCTTGTTTTGGAAGTGAATAATAATAAACCGCCTAATTTCTCTCATTTGGCATACAAAAAGGTCCCTGTGCATGATGTAGAAGTGGGTTCATATATCTTGGTCAAAGATGGTGAGTTTGTGCCAGTTGATTGTGAAGTTTTCCAAGGTAGATCAACAATTACTATAGAGCATTTGACTGGGGAAATGAAACCAGTAGAGAGGACAGTTGGGGAAAGGATTCCAGGTGGAGCACATAACTTGAGTGGTATGATGATAGTGAAGGCAACAAAGACATGGAAGGAGTCTACATTGAGCAGGATTGTACAATTGACTGAAGAAGCACAACTAAATAAGCCAAAGCTTCAAAGGTGGCTGGATGAATTTGGGGACCATTACAGCAAGGTGGTTGTAGTTCTATCAATTGCTGTTGCCTTCATTGGACCACTTCTTTTCAAGTGGCCTTTCATTAGTACTTCAGTTTGCAGAGGATCAGTTTACAGAGCGTTGGGGCTCATGGTGGCAGCATCTCCTTGTGCATTAGCTGTTGCTCCATTGGCATATGCTATTGCCATTAGTGCCTGTGCAAGAAAGGGTATATTGCTGAAAGGTGGGCATGTTTTAGACGCTCTAGCTTCTTGCCACACTATTGCTTTTGATAAAACTGGGACTTTGACAAGTGGAAAACTAACATTCAAAGCAATTGAACCAATCTATGGACATGGGGTCAGAGCCTATAGATCAAAATTTGTATCTTGTTGTATCCCTAGTTGTGAAATAGAAGCCCTTGCTGTTGCTGCTGCCATGGAGAGGGGTACTACTCATCCTATTGGAAGAGCTGTTGTGGACCATTGTGTGGGCAAAGATCTTCCACCTGTGGCTGTTGAAAATTTTGAGTCTTTACCAGGCAGAGGCCTTTCTGCTACACTGACTAGCATTGAGTCAGGAATTGGAGGAGGGGAACTGTTGAAAGCATCAATTGGATCCCTAGAGTATATCCTTTCACTTTGTAAATCTGAAGATGAGTTGAAAAAGATCAAGGAAGCTATGAGCACATCGTCTTATGGGAGTGACTTTGTTCATGCTGCTCTCTCTGTTAATAAAAAGGTAACACTGCTTCATTTTGAGGATGAACCTCGACCTGGGGTATTAGATGTCATACTGGCATTACAGGATCAAGCAAAGCTCCGTGTAATGATGCTAACTGGTGACCATGAGTCAAGTGCATGGAGAGTTGCAAATGCTGTGGGTATCAAGGAGGTTTACTGCAGCCTGAAACCTGAGGATAAGCTCAATCATGTGAAGAGTATATCAAGGGAGGCAGGTGGAGGTCTGATAATGGTAGGTGATGGCATTAATGATGCACCTGCACTAGCTGCTGCTACCGTGGGTATTGTGCTTGCTCAACGCGCTAGTGGAACTGCAATTGCTGTTGCTGATGTGCTATTGCTACGGGACAATATTTCTGCTGTTCCATTCTGTGTATCTAAATCTCGTCAGACAACCTCCTTGGTCAAACAAAATGTGGCCCTTGCTTTATCATGCATTCTTCTGGCCTCTCTCCCATCTGTGTTGGGGTTTCTACCACTTTGGTTAACGGTTCTTTTGCATGAAGGCGGTACTCTTCTTGTCTGCCTCAATTCTGTACGCGCTCTGAATGAGCCCACGTGGTCCTGGAAGCAAGATCTCGTACCAGTGGTTGATAAATTCAAGTCCACAATTATGTTTTTAAGAAGACATACCACCACCTCAAGCAGCACAAGGGCTGCTCCCCTATAA 2490 0.4542 METLPFRGVPSLSCARRRVNNSFEPFHHRTLFFYNLSLPKSLFPPLNFPLLPRHRALQFVAKAEDSHHHHHHPHNDHHHDDHHHHHGHGHGHHHHHHGSGSTLSRTQESFLRIAKAIRWADLADFLRENLHLCCCSTGLFLAAAACPYLIPKPAVKPLQNAFIFVAFPLVGVSASLDALIDITGGKVNIHVLMALAAFASVFMGNPLEGGLLLAMFNLAHIAEEYFTSRSVVDVKELKENYPDFALVLEVNNNKPPNFSHLAYKKVPVHDVEVGSYILVKDGEFVPVDCEVFQGRSTITIEHLTGEMKPVERTVGERIPGGAHNLSGMMIVKATKTWKESTLSRIVQLTEEAQLNKPKLQRWLDEFGDHYSKVVVVLSIAVAFIGPLLFKWPFISTSVCRGSVYRALGLMVAASPCALAVAPLAYAIAISACARKGILLKGGHVLDALASCHTIAFDKTGTLTSGKLTFKAIEPIYGHGVRAYRSKFVSCCIPSCEIEALAVAAAMERGTTHPIGRAVVDHCVGKDLPPVAVENFESLPGRGLSATLTSIESGIGGGELLKASIGSLEYILSLCKSEDELKKIKEAMSTSSYGSDFVHAALSVNKKVTLLHFEDEPRPGVLDVILALQDQAKLRVMMLTGDHESSAWRVANAVGIKEVYCSLKPEDKLNHVKSISREAGGGLIMVGDGINDAPALAAATVGIVLAQRASGTAIAVADVLLLRDNISAVPFCVSKSRQTTSLVKQNVALALSCILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPTWSWKQDLVPVVDKFKSTIMFLRRHTTTSSSTRAAPL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1185 829 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Vvi7g1185 829 Gene3D - 448 736 IPR023214 -
Vvi7g1185 829 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 768 IPR023298 -
Vvi7g1185 829 MobiDBLite consensus disorder prediction 71 100 - -
Vvi7g1185 829 Pfam haloacid dehalogenase-like hydrolase 453 698 - -
Vvi7g1185 829 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 59 827 - -
Vvi7g1185 829 CDD P-type_ATPase_HM 139 787 - -
Vvi7g1185 829 MobiDBLite consensus disorder prediction 62 102 - -
Vvi7g1185 829 SFLD p-type atpase 437 738 IPR044492 -
Vvi7g1185 829 NCBIfam HAD-IC family P-type ATPase 588 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi7g1185 829 NCBIfam HAD-IC family P-type ATPase 254 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi7g1185 829 PRINTS H+-transporting ATPase (proton pump) signature 685 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi7g1185 829 PRINTS H+-transporting ATPase (proton pump) signature 717 742 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi7g1185 829 NCBIfam heavy metal translocating P-type ATPase 189 787 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi7g1185 829 Gene3D - 466 616 IPR023299 GO:0000166
Vvi7g1185 829 SUPERFAMILY Calcium ATPase, transduction domain A 264 348 IPR008250 -
Vvi7g1185 829 Pfam E1-E2 ATPase 263 435 - -
Vvi7g1185 829 Gene3D - 228 353 - -
Vvi7g1185 829 SFLD C1.7: P-type atpase like 437 738 - -
Vvi7g1185 829 SUPERFAMILY HAD-like 453 785 IPR036412 -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 631 641 - -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 608 619 - -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Vvi7g1185 829 PRINTS P-type cation-transporting ATPase superfamily signature 709 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1185 Vvi-Chr7 16179866 16207035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1185 104 809 Primary Pumps ATPases AT4G37270 75.637 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1185 K01534 - vvi:100255947 1507.27