Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1177 ATGATTGGTGAGGGTGGGTTCGGAAAAGTTTATCAAGGAACTCTATGGGATGGCAAGAAAGTGGCTGTCAAACGAAGTCAACCAGGGCATGGCCAGTGCTTCTCTGAATTCCAAACCGAAATCATAGTCTTATCCAAAGTTCGGCACCGGCATCTTGTTTCCTTGATTGGGTATTGTGATGAGAGGCTTGAGATGATACTAGTTTATGAATTCATGGAAAGGGGGACTCTAAGACACCATCTATACAATTCCAATGAGCGCTGCACCACATCATCTTCCCAGCCACAACTGTCTTGGGAGCAAAGGCTTGAGATCTGCATTGGTTCAGCATGTGGTCTTGATTACCTTCACACTGGTTCTGATAGGGGAATCATTCACCGTGATGTTAAGTCAACAAACATCTTGCTTGATGAGAATTATGTGGCCAAAGTTGCTGATTTCGGTCTTTCAAAATCAGGCACTTCGGATCAGAGTCATGTCAGTACAGATGTAAAAGGCAGTTTTGGTTACCTCGATCCAGAATATTTCAGATGGTTGCAGTTAACGGATAAGTCGGATGTGTACTCTTTTGGAGTGGTCCTCCTCGAAGTGCTTTGTGCCAGACCGGTCATCAACAACTCACTTCCAATGGAGGAGATCAATTTAGCTGAATGGGCCATGTCTTGGCAAAAGAAAGGACAGCTCGAAAAGATTGTTGATCCTTTTCTCGTGGGTAAGATCAATTCTAACTCATTGCGGAAGTTTGGAGAAACGGCAGAGAAGTGTTTGAAAGACTGCGGTGCCGATAGGCCTACAATGCCTGATCTCTTATGGGACTTGAAATATGCACTTGAGCTGCAACATGCTACAACGCTGGAAGAAGGATATATGAACAGCACCACAGATGCTTCTTCAGAGATGCCACTGCTAGGTGTTCAGTGCTTGCCTTCTTCTAGCTTTCCTCTAATGGAGAAAGATGATGCAGCCAGGGAAAACGATGATGGTTCAGACCCTACTGCTAGTGACGTGTTTTCTCAGTTGAGGATTACTGGTGCCAGATGA 1041 0.4496 MIGEGGFGKVYQGTLWDGKKVAVKRSQPGHGQCFSEFQTEIIVLSKVRHRHLVSLIGYCDERLEMILVYEFMERGTLRHHLYNSNERCTTSSSQPQLSWEQRLEICIGSACGLDYLHTGSDRGIIHRDVKSTNILLDENYVAKVADFGLSKSGTSDQSHVSTDVKGSFGYLDPEYFRWLQLTDKSDVYSFGVVLLEVLCARPVINNSLPMEEINLAEWAMSWQKKGQLEKIVDPFLVGKINSNSLRKFGETAEKCLKDCGADRPTMPDLLWDLKYALELQHATTLEEGYMNSTTDASSEMPLLGVQCLPSSSFPLMEKDDAARENDDGSDPTASDVFSQLRITGAR* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1177 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi7g1177 346 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Vvi7g1177 346 FunFam receptor-like protein kinase FERONIA 1 71 - -
Vvi7g1177 346 Pfam Protein tyrosine and serine/threonine kinase 2 202 IPR001245 GO:0004672|GO:0006468
Vvi7g1177 346 SUPERFAMILY Protein kinase-like (PK-like) 1 273 IPR011009 -
Vvi7g1177 346 PANTHER OS07G0166700 PROTEIN 1 280 IPR045272 GO:0004714|GO:0006468
Vvi7g1177 346 Gene3D Transferase(Phosphotransferase) domain 1 73 297 - -
Vvi7g1177 346 MobiDBLite consensus disorder prediction 317 346 - -
Vvi7g1177 346 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Vvi7g1177 346 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1177 346 FunFam Receptor-like protein kinase FERONIA 72 295 - -
Vvi7g1177 346 SMART serkin_6 1 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1177 346 Coils Coil 345 346 - -
Vvi7g1177 346 CDD STKc_IRAK 2 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1177 Vvi-Chr7 16106956 16107996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1177 1 322 Receptor kinase-like Gene Family AT4G39110 63.889 1.65e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi7g1177 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1177 - - vvi:109122928 574.704