LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g1173	ATGGTTTCCATGGAGAAGCTTCACCGCCAAGACGTTCTTTTCACTCTCCTCCTCCTCATCTACTCCTCATCTAATCTGCTCCTCGCTTCAGGCTACACTCTTCCAAATAAGTACTTCATCAACTGTGGTTCCAGCTCTAACGCCACAGTCGACCGCCGGAACTTTGTCGGAGATGTGAACTCCAGCTCATCCTATTTCTCCGTGAGACCAAGCGATGATTTGAAGGATGGCAACCCAGAAACCGGTACATCTCCTCTCTACCGAACAGCTAGAATTTTCAGAAAAGAATCTTCGTATGAGTTCCGAATCACTGAAAATGGCACCTACCTGGTACGTTTTCATTTCTACCCTTTCTTGACGCCAACAAATCTTACTGCTGCTCTCTTCAATGTTCGGGTCACTGGGTATTCATTGCTGTCCAATTTCAGAGTCCAGAACAGAAGTAACTCTCCTGTAATTAAGGAATTTGCAATTCCCATAGAGGTGGGAAACTTCACAATCTACTTCACCCCTCAAAAATCATCTTTGGCTTTTGTAAACGCGGTAGAAGCGTTTCTTGCCCCTGAAAAGTTCGTTTCAAATGAATCGAGTCACATTACTCCTGCGGGAAGTGACGGTAATTACAGAGGTCTGGAATCTCAGGCTTTACAAATAATCCTTAGGATAAACGTTGGAGGCCTGAAAATCCCACCAAATAATGATACACTGTGGAGAAGTTGGACACCCGACGATGATTATCTACTTCTCCCAGGTTCTGCCAAAAATAGTGAGGCCTTCAATAATACGCCCAAGTACAATCCTTCGGAAGCTACTAACTATTCCGCCCCGGTTGATGTCTACAAGACTGCCAAAGAACTTAATTCAAGTTTCTTCAATGTAACCTGGGGTTTTAGGGTGAATAAGAATTCTACCTACTTCGTGAGGGTGCATTTCTGTGACATAATTAGCCAAGATGAAGACGGTATTGTGTTCAATTTCTCCATTTATAGTCGGTTCATTGAACTTATATATTCATATGGCCCCACCTCCAATATCGGAACTCCATTTTACAAGGATTATGTGGTTGATTCCGATGATTCAAGTCTTATGAATATCAGTATAGGCCCTCGATCTGAGTCACCAAACAAGACTGCCTTTCTGAATGGGCTCGAGATTATGGAGCTTATAACCAAGGAATCTGGTTCATTGCCTGCGCCAAGCAAGCCAAAGAAAACAGTTGTCTTTGTCATGGCAGGTTGTGTTGTTGGAGTGGCTTTTCTCCTTATCCTGCTGGGGGTGATCTTGAAATGCAGGAAAGCAAACTCTGTTGAAAGTGGAGAGTGGTCTATGCTTCTTTATGGAGGGAGATACTTCAGTTGGATAACTGGAACTGGAAGAGCTGTCGAAACCTCCTCTGTTTCCAGCTTAAACCTGGGGTTAAAAATACCCTTTTCTGAAATCCTGCATGCAACTCATCGCTTTGACAAAAAATCAATGATTGGTAAGGGTGGGTTCGGGAAAGTTTATAGAGGAACACTTCGGGATGGGAAGAAAGTGGCTGTCAAACGAAGTCAACCAGGGCGAGGCCAGGGCTTGTACGAATTTCAAACTGAAATCATAGTCTTAAACAAAATTCGCCACCGCCACCTTGTTTCCTTGATTGGATATTGTGATGAGATGCATGAGATGATACTGGTTTATGAATTCATGGAAAACGGGACTCTAAGAGACCGTCTATACAATTGGAATAAGGATTGCACCATATCAACTCCCCGTTCACAACTGTCTTGGGAGCAAAGGCTTGAGATTTGCATTGGTTCGGCATGGGGTCTTGATTATCTTCACAGTGATTCCGGGATCATTCACCGTGATGTTAAGTCTACAAATATCTTGCTTGATGAGAATTATGTGGCTAAAGTTGCTGATTTCGGTCTTTCAAAATCCAGCGGTACAGATCAAACTCATGTCAGTACGGATGTGAAAGGCAGTCCTGGTTACCTTGATCCTGAATATTTCAGATGCATGCAGTTAACAGATAAATCGGATGTATACTCCTTCGGAGTAGTTCTCCTGGAAGTGCTTTGCGCTAGGCCAGCTATTAAAAGCTCAGTTCCCAGTGAGGAAACGAATTTGGCTGAATGGGCGATGTCATGGCAAAAGAAAGGAGAGCTTGAAAAAATTGTGGATCCTTTTCTCGTGGGTAAAATCAATCCTAACTCATTGCGTAAGTTTGGTGAAACGGCAGAGAAGTGTTTGAAAGACTCTGGTACCGAAAGGCCTACCATGCGCGATGTCTTATGGGACTTGAAATATGCACTTGTTCTGCAACAAGCTACAACGCTGGAAGAAGGATATGCGGACAGCACAACAGATGCTTTTTCGGAGATGCCACTGCTTGGTGTTCAGTCCTTGCCTTCTTCTAGCTTTCCTCTAATGGAGAAAGATGATGTAGCCAGGGAAAATGATGATGGTTCAGACCCAACTCCTAGTGACGTGTTTTCCCAATTGAGGATTATTGGTGCCAGATAA	2508	0.4362	MVSMEKLHRQDVLFTLLLLIYSSSNLLLASGYTLPNKYFINCGSSSNATVDRRNFVGDVNSSSSYFSVRPSDDLKDGNPETGTSPLYRTARIFRKESSYEFRITENGTYLVRFHFYPFLTPTNLTAALFNVRVTGYSLLSNFRVQNRSNSPVIKEFAIPIEVGNFTIYFTPQKSSLAFVNAVEAFLAPEKFVSNESSHITPAGSDGNYRGLESQALQIILRINVGGLKIPPNNDTLWRSWTPDDDYLLLPGSAKNSEAFNNTPKYNPSEATNYSAPVDVYKTAKELNSSFFNVTWGFRVNKNSTYFVRVHFCDIISQDEDGIVFNFSIYSRFIELIYSYGPTSNIGTPFYKDYVVDSDDSSLMNISIGPRSESPNKTAFLNGLEIMELITKESGSLPAPSKPKKTVVFVMAGCVVGVAFLLILLGVILKCRKANSVESGEWSMLLYGGRYFSWITGTGRAVETSSVSSLNLGLKIPFSEILHATHRFDKKSMIGKGGFGKVYRGTLRDGKKVAVKRSQPGRGQGLYEFQTEIIVLNKIRHRHLVSLIGYCDEMHEMILVYEFMENGTLRDRLYNWNKDCTISTPRSQLSWEQRLEICIGSAWGLDYLHSDSGIIHRDVKSTNILLDENYVAKVADFGLSKSSGTDQTHVSTDVKGSPGYLDPEYFRCMQLTDKSDVYSFGVVLLEVLCARPAIKSSVPSEETNLAEWAMSWQKKGELEKIVDPFLVGKINPNSLRKFGETAEKCLKDSGTERPTMRDVLWDLKYALVLQQATTLEEGYADSTTDAFSEMPLLGVQSLPSSSFPLMEKDDVARENDDGSDPTPSDVFSQLRIIGAR*	836

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g1173	835	CDD	STKc_IRAK	493	763	-	-
	Vvi7g1173	835	FunFam	receptor-like protein kinase FERONIA	454	562	-	-
	Vvi7g1173	835	Gene3D	Phosphorylase Kinase; domain 1	455	562	-	-
	Vvi7g1173	835	FunFam	Receptor-like protein kinase FERONIA	563	784	-	-
	Vvi7g1173	835	Pfam	Protein tyrosine and serine/threonine kinase	490	758	IPR001245	GO:0004672\|GO:0006468
	Vvi7g1173	835	FunFam	Putative receptor-like protein kinase	37	188	-	-
	Vvi7g1173	835	MobiDBLite	consensus disorder prediction	804	826	-	-
	Vvi7g1173	835	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	613	625	IPR008271	GO:0004672\|GO:0006468
	Vvi7g1173	835	SUPERFAMILY	Protein kinase-like (PK-like)	474	760	IPR011009	-
	Vvi7g1173	835	PANTHER	OS07G0166700 PROTEIN	474	769	IPR045272	GO:0004714\|GO:0006468
	Vvi7g1173	835	SMART	serkin_6	487	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g1173	835	Gene3D	-	215	389	-	-
	Vvi7g1173	835	Gene3D	-	36	186	-	-
	Vvi7g1173	835	Gene3D	Transferase(Phosphotransferase) domain 1	563	781	-	-
	Vvi7g1173	835	Pfam	Malectin-like domain	40	387	IPR024788	-
	Vvi7g1173	835	ProSiteProfiles	Protein kinase domain profile.	487	767	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g1173	835	FunFam	Putative receptor-like protein kinase	214	389	-	-
	Vvi7g1173	835	ProSitePatterns	Protein kinases ATP-binding region signature.	493	515	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g1173	Vvi-Chr7	16095644	16098151	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g1173	4	835	Receptor kinase-like Gene Family	AT2G23200	44.343	0.0	632

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi7g1173		Malectin_like	1.2e-31	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g1173	-		-	vvi:109122928	1655.96