Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1172 ATGATCTACTTCACACCTCAAAAATCATTTTTTGCTTTTGTGAACGCCATAGAAGCCTTTATTGCTCCGGAACGTTTCATTTCAGATGGAGTTAGTCACGTTACTCCCGTAGGGCTTAAAGGCACTTACAATGGTTTGTTATCTCGGGCTTTTCATATAATCCATAGGATTAACGTTGGAGGCTTCACAATCACACCAAGTAATGATCTACTGTGGAGAAGTTGGACACCAGATGATGACTATCTATTTCTCCCAAATTCTGCAAATGACATCGAGTTCTACGGTGAGCTTAATTCCACGGCAGCTGCTGCAAAGTTGGCCCCAGATAATGTCTACAAGACTGCCAAAGAATTGAACATAAATCATAGCAGGTCATCAAATTTTTTCAATATGACCTGGGGTTTCGATGTGAATAAGAATTCTACCTACTTCGTGAGGGTGCATTTCTGTGACATAATTAGCCAAGATGTTGATGGTATTGTGTTCAATTTATCCATCTATAATCAGTTCATTGATAAGATCTATCCATATGACATTACTCACCATCCAGCAACTCCCTTTCACCGTGATTATGTGGTTGATTCTGATGATTCTGGATATGTGAATATCAGTGTAGGCCCTCGTAGCAAATCACTGAACCAAGCTGCTTTTCTGAATGGACTTGAGATCATGGAGAAGATCGAGCGATCTGGCGCATACCCTGTTACTAGCAATCCGAATAAGACTCTTGAGTCTCCACCCAGCAATCCGAATAAGACTCTTGAGTCTCCACCCAGCAATCCGAATAAGACTCTTGAGTCTGCGCCCAGCAATCCGAATAAGACCCTTAAGCCTGCGCCAGGCAAACCAAAGAAGAACTTCATGTTTGCAATAGCTGGTTCTGTTGTTGGAGTGGCTTTTGTCCTTATGCTGATCGGAGTGTTCATGAAATGCAGGAAAGCAAACCCTGTTGAGACCGGGGGTTGGTCTGTGCTTCTTTATGGAGGGAGATCTTTTTGGAAGACAAATGATAGAACTGCCAACAACTCCTCTGTTTCTAGTTTAAACCTCGGCTTAAAACTACCCTTTTCTGAAATACTGCATGCCACTAATAACTTCAACCCAAAAGTGATCGTCGGGGAGGGTGGGTTCGGGAAAGTTTATAGAGGAACTCTTCGAGATGGTAAGAAAGTGGCTGTCAAACGAAGTCAACCAGGGCAACGCCAGGGCTTTGCTGAATTTCAAGCTGAAATCAATGTCTTATCCAAAATTCGCCACCGCCATCTGGTTTCCTTGATTGGATACTGTGATGAGAGGCATGAGATGATACTGGTTTATGAATTCATGGAAAACGGGACTCTGAGAGACCATCTATACAATTGGAATGAGGAGTGCACCATATCAACTCCCCGATCACAACTGTCTTGGGAGCAAAGGCTTGAGATTTGCATTGGTTCAGCATGCGGTATTGATTACCTTCACACTGGTTCTGATGGGGGAATCATTCACCGGGATGTTAAATCAACAAACATTTTGCTTGATGAGAATTATGTGGCCAAGGTTTCTGATTTTGGTCTTTCAAAATCAGGCACTTCGGATAAATCTCATATCAGTACAAATGTAAAAGGCAGTTTTGGTTACCTTGATCCAGAATATTTCAGATGCTTGCATTTAACGGATAAATCAGATGTATACTCTTTTGGAGTGGTTCTTCTGGAAGTGCTTTGTGCTAGGCCGGCTATTAAAAGATCAGCTCCCAGTGGGGAAATGAATTTAGCTGAATGGGCCATGTCATGGCAAAAGAAAGGACAGCTCGAAAATATTGTTGATCCTTTTCTCCTGGGTAAAGTTAATCCCAACTCATTGCGGAAATTCGGAGAAACGGCAGAGAAGTGTTTGAAAGACTCGGGTGCTGATAGGCCTAATATGCGCAATGTAATATGGGACTTGAAATATGCTCTTCAGCTCCAACGAGTTACAAGGCAGAGAGAAGGATATGGGGACAGCATAATAGATGCTTCATTGGAGTTCCCACTGCCTATTGTTCAGTACTCACCTTCTCCCAGCTTTCTGATTAAGGAATATGATATCCCCACGGAAAGTGGTGATGGTTCAGCACCAACTGCTAGTCAAGTGTTCTCCCAACTGAGAATTGGTGACGCCAGATGA 2148 0.4283 MIYFTPQKSFFAFVNAIEAFIAPERFISDGVSHVTPVGLKGTYNGLLSRAFHIIHRINVGGFTITPSNDLLWRSWTPDDDYLFLPNSANDIEFYGELNSTAAAAKLAPDNVYKTAKELNINHSRSSNFFNMTWGFDVNKNSTYFVRVHFCDIISQDVDGIVFNLSIYNQFIDKIYPYDITHHPATPFHRDYVVDSDDSGYVNISVGPRSKSLNQAAFLNGLEIMEKIERSGAYPVTSNPNKTLESPPSNPNKTLESPPSNPNKTLESAPSNPNKTLKPAPGKPKKNFMFAIAGSVVGVAFVLMLIGVFMKCRKANPVETGGWSVLLYGGRSFWKTNDRTANNSSVSSLNLGLKLPFSEILHATNNFNPKVIVGEGGFGKVYRGTLRDGKKVAVKRSQPGQRQGFAEFQAEINVLSKIRHRHLVSLIGYCDERHEMILVYEFMENGTLRDHLYNWNEECTISTPRSQLSWEQRLEICIGSACGIDYLHTGSDGGIIHRDVKSTNILLDENYVAKVSDFGLSKSGTSDKSHISTNVKGSFGYLDPEYFRCLHLTDKSDVYSFGVVLLEVLCARPAIKRSAPSGEMNLAEWAMSWQKKGQLENIVDPFLLGKVNPNSLRKFGETAEKCLKDSGADRPNMRNVIWDLKYALQLQRVTRQREGYGDSIIDASLEFPLPIVQYSPSPSFLIKEYDIPTESGDGSAPTASQVFSQLRIGDAR* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1172 715 Gene3D - 50 228 - -
Vvi7g1172 715 FunFam receptor-like protein kinase FERONIA 331 441 - -
Vvi7g1172 715 Gene3D Phosphorylase Kinase; domain 1 330 441 - -
Vvi7g1172 715 SUPERFAMILY Protein kinase-like (PK-like) 342 643 IPR011009 -
Vvi7g1172 715 FunFam Putative receptor-like protein kinase 49 227 - -
Vvi7g1172 715 SMART serkin_6 366 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1172 715 CDD STKc_IRAK 372 644 - -
Vvi7g1172 715 MobiDBLite consensus disorder prediction 233 274 - -
Vvi7g1172 715 Gene3D Transferase(Phosphotransferase) domain 1 442 663 - -
Vvi7g1172 715 FunFam Receptor-like protein kinase FERONIA 442 664 - -
Vvi7g1172 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Vvi7g1172 715 MobiDBLite consensus disorder prediction 232 280 - -
Vvi7g1172 715 Pfam Protein tyrosine and serine/threonine kinase 372 639 IPR001245 GO:0004672|GO:0006468
Vvi7g1172 715 ProSiteProfiles Protein kinase domain profile. 366 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1172 715 Pfam Malectin-like domain 48 225 IPR024788 -
Vvi7g1172 715 PANTHER OS07G0166700 PROTEIN 353 650 IPR045272 GO:0004714|GO:0006468
Vvi7g1172 715 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1172 Vvi-Chr7 16084483 16086630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1172 2 675 Receptor kinase-like Gene Family AT2G21480 42.529 1.39e-172 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi7g1172 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1172 - - vri:117918399 1390.94