LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g1171	ATGGAGAAGCTTCACCACCAAGACGCTCTTTTCAGTCTCCTCCTCCTCCTCTACTCCTCATCTAATCTGCTCCTTGCTTCAGGCTACACTCTTCCAAATAAGTACTTCATCAACTGTGGTTCAAGCTATAACGCCACAGTCGACCGCCGGAACTTTGTTGGAGATGTGAACTCCGGCTCATCCTATTTCTCCGTAAGACGAAGCCATGTGTTGAAGGATGGCAGCCCAGAAAACGGTACATCTCCTCTCTACCAAACAGCTAGATTTTTCAGAAAAGAATCTTCGTATGAGTTCCAAATCACCGAAAATGGTACCTACGTGGTACGCTTTCATTTCTACCCTTTCTTGACGCCAACAAATCTTACTGCTGCTCTCTTCAATGTTCGGGCCAATGGGTATTCATTGCTGTCCAATTTCAGAGTCCAGAACAGAAGTAAGTCTCCCGTGATTAAGGAATTTGCAATTCCCATTGATGTGGGAAACTTCATCATCTACTTCACTCCTCAAAAATCATCTTTTGCATTTGTAAACGCTGTAGAAGCGTTTCTTGCCCCTGAAAAGTTCGTTTCAAATAAATCGCGTTACATTACTCCTGCCGGAAGTGACGATAGCTACAGTGGTTTGGAATCTCGGGCTTTACATATAATTCATAGGATAAACGTTGGAGGCCAGACAATCCCACCAAATAATGATACACTGTGGAGAAATTGGACAACCGACGATGATCATCTACTTCTCCCAGGTTCTGCCACAAATAGTAAGGTCTACAATAATACGCCCATATACGATCTTTCGATAGCTACTAACTATTCCGCCCCGGATGATGTCTACAAGACTGCCAAAGAACTTAATAGAAATTATAGCAATGCAACCTGGGTTTTCAGGGTGAATGAGAGTTCTACCTACTTCCTAAGGGTGCATTTCTGTGACATAATTAGCCAAAATGATGATGGTACTGTGTTCAATTTCTCTATTTATAGTCGGTTCATTGAACTTATATATTCATATGACCCCACCACCCAGATCGGAACTCCATTTTACAAGGATTATGTGGTTGATTCCGATGATTCAGGTTATATGAATATCAGTATAGGCCATACAAAAATAGTTGAATCACGGACAGCCTTTCTGAATGGGCTTGAGATTATGAAGCTTATAACCAGGGAATCTGTTTCATTGCGTGCGCCGAAGAAAAACTTTATATTCGTCATAGTAGGTACCGTTGTTGGAGTACTGGCTTGTCTCCTTATCCTGCTGGGGATGATCTTTAAATGCAGGAAAGCAAACTCTGTTGAAAGTGAAGAGTGGTCTGTGCCTCTTTATGGAGGGAGATACTTCAGTTGGATAACTAGAAGAACTGCCGAAACCTCCTCTGTTTCCAGTTTAAACCTGGGGTTAAAAATACCCTTTTCTGAAATCCTACATGCAACTCATCGTTTTGACAAAAAATTGATGATCGGTAAGGGTGGGTTCGGGAAAGTTTATAGAGGAACTCTTCGGGATGGGAAGAAAGTGGCTGTCAAACGAAGTCAACCAGGGCAAGGCCAGGGCTTCTACGAATTTCAAACTGAAATCATTGTCTTAACCAAAATTCGCCACCGCCACCTCGTGCCTTTGATTGGATATTGTGATGAGAGGCGTGAGATGATACTGGTTTACGAATTCATGGAAAATGGTACTTTACAAGACCTCCTATATGATTCCAATGAGGACTGCTCGACGTCATCTCCCCGATCAGAACTGTCTTGGGAGCAAAGGCTTGAGATTTGCATTGCTTCAGCTATGGGTCTTGATTACCTTCACCGTGGCGCCGGAATCATTCACCGCGATGTTAAGTCAACGAATATCTTGCTTGATGAGAATTATGTGGCTAAAGTTGCGGATTTCGGTCTTTCAAAATCAGGCGATGCAGATCAAACCCACTTCAGTACTGACGTCAAAGGCAGCTTTGGTTACCTTGATCCCGAATATTTCAGATGCATGCAGTTAACAGATAAATCGGATGTATACTCCTTTGGAGTAGTTCTCCTGGAAGCGCTCTGCTCTAGGCCAGCCATTAAAAACTCAGTTACCAGAGAAGAAATGAATTTAGCTGAATGGGCGATTTCATGGCAAAAGAAAGGGGAGCTTGAAAAGATTGTGGATCCTTTTCTCGTGGGTAAAATCAATCCTAACTCATTGCGTAAGTTCGGAGAAACGGCAGAGAAGTGTTTGAGAGACTCTGGTGCTGATAGGCCTACCATGCGTGAGGTGGTATGGGACTTGCGATATGCACTTGATCTGCAACAAGCTAGGATTCCGAGAGAAGGATATGCCGACAGTATCACCGATGATTCTTTCGACTACTTGCCACTGTCTGGTGTTCCGTACGTGCCTTCTCCTAGCTTTCTTCTAATTGAGGAAGATGAAGTCCCCATAGAAGGTGATGATGGTTCAGAAGCAACTGCTAGTGAAGTGTTCTCCCAACTGGGGATCAGTGGTGCCAGATAA	2490	0.4345	MEKLHHQDALFSLLLLLYSSSNLLLASGYTLPNKYFINCGSSYNATVDRRNFVGDVNSGSSYFSVRRSHVLKDGSPENGTSPLYQTARFFRKESSYEFQITENGTYVVRFHFYPFLTPTNLTAALFNVRANGYSLLSNFRVQNRSKSPVIKEFAIPIDVGNFIIYFTPQKSSFAFVNAVEAFLAPEKFVSNKSRYITPAGSDDSYSGLESRALHIIHRINVGGQTIPPNNDTLWRNWTTDDDHLLLPGSATNSKVYNNTPIYDLSIATNYSAPDDVYKTAKELNRNYSNATWVFRVNESSTYFLRVHFCDIISQNDDGTVFNFSIYSRFIELIYSYDPTTQIGTPFYKDYVVDSDDSGYMNISIGHTKIVESRTAFLNGLEIMKLITRESVSLRAPKKNFIFVIVGTVVGVLACLLILLGMIFKCRKANSVESEEWSVPLYGGRYFSWITRRTAETSSVSSLNLGLKIPFSEILHATHRFDKKLMIGKGGFGKVYRGTLRDGKKVAVKRSQPGQGQGFYEFQTEIIVLTKIRHRHLVPLIGYCDERREMILVYEFMENGTLQDLLYDSNEDCSTSSPRSELSWEQRLEICIASAMGLDYLHRGAGIIHRDVKSTNILLDENYVAKVADFGLSKSGDADQTHFSTDVKGSFGYLDPEYFRCMQLTDKSDVYSFGVVLLEALCSRPAIKNSVTREEMNLAEWAISWQKKGELEKIVDPFLVGKINPNSLRKFGETAEKCLRDSGADRPTMREVVWDLRYALDLQQARIPREGYADSITDDSFDYLPLSGVPYVPSPSFLLIEEDEVPIEGDDGSEATASEVFSQLGISGAR*	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g1171	829	FunFam	receptor-like protein kinase FERONIA	447	555	-	-
	Vvi7g1171	829	FunFam	Putative receptor-like protein kinase	211	386	-	-
	Vvi7g1171	829	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Vvi7g1171	829	SMART	serkin_6	480	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g1171	829	Gene3D	-	212	386	-	-
	Vvi7g1171	829	Gene3D	-	33	183	-	-
	Vvi7g1171	829	FunFam	Receptor-like protein kinase FERONIA	556	777	-	-
	Vvi7g1171	829	FunFam	Putative receptor-like protein kinase	34	185	-	-
	Vvi7g1171	829	MobiDBLite	consensus disorder prediction	807	829	-	-
	Vvi7g1171	829	Pfam	Protein tyrosine and serine/threonine kinase	485	752	IPR001245	GO:0004672\|GO:0006468
	Vvi7g1171	829	ProSiteProfiles	Protein kinase domain profile.	480	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi7g1171	829	Pfam	Malectin-like domain	37	384	IPR024788	-
	Vvi7g1171	829	ProSitePatterns	Protein kinases ATP-binding region signature.	486	508	IPR017441	GO:0005524
	Vvi7g1171	829	PANTHER	OS07G0166700 PROTEIN	467	762	IPR045272	GO:0004714\|GO:0006468
	Vvi7g1171	829	SUPERFAMILY	Protein kinase-like (PK-like)	467	753	IPR011009	-
	Vvi7g1171	829	Gene3D	Transferase(Phosphotransferase) domain 1	556	773	-	-
	Vvi7g1171	829	Gene3D	Phosphorylase Kinase; domain 1	445	555	-	-
	Vvi7g1171	829	CDD	STKc_IRAK	486	752	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g1171	Vvi-Chr7	16076375	16078864	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g1171	1	829	Receptor kinase-like Gene Family	AT2G23200	41.858	0.0	600

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vvi7g1171		Malectin_like	1.8e-27	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g1171	-		-	vvi:104879916	1651.72