Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1149 ATGACGATCAGCCAGAGGGAGGAAGAGGCAAATGAGGTATCAAGCAACAACCAAGATGCTGAATCAAAGACAAGATCCGATGATGAAAAAACATCTGGAGATGATAATTTAGGAGAGTGGTTGAGTTTAAGCCTCAGCAGAAATGAGGCCTTCACAACTGGAGATGGCGATCCTCAATCAAAACCAGCTGGTAACAAAATTTTCTCATGCAATTTCTGCATGAGGAAGTTCTTCAGTTCACAAGCTCTAGGGGGTCATCAGAATGCACACAAAAGAGAAAGGGGAGCAGCTAAAAGGTACCAATCTCACAGGATGATGATGGCAACCATGGGGTTTCCCCTTAACTCTTTAACAATCCGATCACTGGGTGCCCAGCCTCACTCTCTTGCGCACAAGCCAGGCCGAGAAGGGACTGAAGTGGCAGCAAGATTTAATGATCCCAACACAGGATTCAGGATGGCTTGGACACCCTTTGTGATGGAAGAAGCAATGGACTCAATCTGGCCAGGAAGCTTTCATGTGGACAAACTGCCCAGTCAAGCATCTGATCAACATAAGCTTGACTTAAATCTCAGCCTGTAA 582 0.4588 MTISQREEEANEVSSNNQDAESKTRSDDEKTSGDDNLGEWLSLSLSRNEAFTTGDGDPQSKPAGNKIFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSHRMMMATMGFPLNSLTIRSLGAQPHSLAHKPGREGTEVAARFNDPNTGFRMAWTPFVMEEAMDSIWPGSFHVDKLPSQASDQHKLDLNLSL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1149 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Vvi7g1149 193 PANTHER ZINC FINGER PROTEIN 4-LIKE 6 193 - -
Vvi7g1149 193 MobiDBLite consensus disorder prediction 1 20 - -
Vvi7g1149 193 Coils Coil 3 23 - -
Vvi7g1149 193 MobiDBLite consensus disorder prediction 21 35 - -
Vvi7g1149 193 Gene3D Classic Zinc Finger 46 112 - -
Vvi7g1149 193 MobiDBLite consensus disorder prediction 1 39 - -
Vvi7g1149 193 SUPERFAMILY beta-beta-alpha zinc fingers 64 94 IPR036236 -
Vvi7g1149 193 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1149 Vvi-Chr7 15914286 15914867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1149 41 172 C2H2 Transcription Factor Family AT1G24625 40.876 1.92e-20 83.2