Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1147 ATGGGAAGACAAAGAGTAGAAATCAAGAAAATTGAGAATAAAGCGGTTCGGCAAGTTACATTTGCTAAACGAAGAAATGGACTCTTAAAAAAGGCCTATGAAATTTCTACGTTGTGCGACATTGAAGTTGCCTTGCTCGCGTTTTCCCCATCGGGAAAACCTACAATTTTTGGTGGGAAGAAAAGGTAA 189 0.3915 MGRQRVEIKKIENKAVRQVTFAKRRNGLLKKAYEISTLCDIEVALLAFSPSGKPTIFGGKKR* 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1147 62 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 SUPERFAMILY SRF-like 2 59 IPR036879 GO:0003677|GO:0046983
Vvi7g1147 62 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi7g1147 62 Gene3D - 13 62 IPR036879 GO:0003677|GO:0046983
Vvi7g1147 62 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1147 Vvi-Chr7 15881221 15881409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1147 1 62 Type I MADS-box Gene Family AT1G77980 66.129 3.87e-25 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi7g1147 SRF-TF 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1147 - - vri:117917295 123.635