Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1144 ATGCCTCCTCGAGAAGAGAGCGAGGAATCCGAGAGACCGTTACTGAGTAGAGCTCACGATTCGGAGGAGGATATACTAGACGAGACAGCGTATGATTCGAGTGAAAAGGTTGTGATCGTGGGGATCGAGGACGGTGACGGCGGAGACTGGTCGAGGGCGCCTCCGTTTTCATGGAAGAAGTTGTGGCTGTTTACGGGGCCTGGGTTCTTGATGAGTATCGCCTTCCTCGATCCCGGGAACCTGGAGGGGGATCTGCAGGCCGGCGCCATCGCCGGGTACTCGTTGCTGTGGTTGCTCTTGTGGGCCACGGCGATGGGGCTTTTGGTGCAGCTGCTGGCGGCGAGGCTCGGAGTGGCGACAGGGAGGCACTTGGCGGAGCTGTGCAGAGATGAGTATCCGAAATGGGCGAGGATGGTGCTGTGGGTCATGGCGGAGCTGGCTTTGATTGGGGCTGATATTCAGGAAGTTATCGGGAGCGCTATTGCTATTAAGATTCTTAGCAATGGAGTTTTGCCTCTTTGGTCTGGCGTTATCATTACCGCGTTTGATTGCTTTATCTTCCTATTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCAGTTTTCGCATTCCTCATTGCGACAATGGCAATCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCCAGTGGCGTAGAACTTCTTCTTGGTATTTTGATTCCAAAACTTAGCTCCAAGACGATAAAGCAAGCTGTGGGAGTTGTGGGTTGCATAATCATGCCTCACAATGTATTCTTGCATTCTGCCCTGGTTCAGTCAAGGGAGATTGACCACAGCAAGAAAGGCCGGGTTCAAGAAGCCCTCAATTACTACTCCATTGAGTCCACTGTTGCCCTCATATTGTCCTTCATTATCAATCTATTTGTTACAACTGTGTTTGCAAAGGGGTTTTATGGTACGGAACAAGCCAATAATATCGGGCTTGTAAATGCGGGCCAGTATCTTCAAGAGAAGTATGGAGGGGGGTTTTTCCCAATTCTATATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACAATTACAGGCACCTATGCAGGGCAGTTTATCATGGGAGGTTTTCTAAATCTGCGTTTGAAGAAATGGATTAGGGCATTGATCACGCGAAGCTGTGCCATTGTGCCCACTATGATAGTTGCTCTTGTTTTTGATACCTCTGAGGACACTTTAGATGTTATGAATGAGTGGCTTAATGTGCTTCAGTCTATTCAGATCCCATTTGCACTTATTCCCCTTCTTTGTTTGGTGTCCAAGGAGCAGATCATGGGGACTTTCAAAATTGGCCCAGTTCTCAAGGGTTGTGGTGCAGAACAGTACAGAGTGCTATTATCATCATACAGAAGGAAGTTGGACCCTCTTTGTTTGTTCTGA 1416 0.4831 MPPREESEESERPLLSRAHDSEEDILDETAYDSSEKVVIVGIEDGDGGDWSRAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLLWATAMGLLVQLLAARLGVATGRHLAELCRDEYPKWARMVLWVMAELALIGADIQEVIGSAIAIKILSNGVLPLWSGVIITAFDCFIFLFLENYGVRKLEAVFAFLIATMAISFAWMFGEAKPSGVELLLGILIPKLSSKTIKQAVGVVGCIIMPHNVFLHSALVQSREIDHSKKGRVQEALNYYSIESTVALILSFIINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCAIVPTMIVALVFDTSEDTLDVMNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGPVLKGCGAEQYRVLLSSYRRKLDPLCLF* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1144 471 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 59 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 Pfam Natural resistance-associated macrophage protein 82 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 53 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 Hamap Divalent metal cation transporter MntH [mntH]. 51 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 NCBIfam Nramp family divalent metal transporter 66 435 - -
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 379 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 170 189 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 413 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 195 216 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 244 267 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 351 370 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g1144 471 PRINTS Natural resistance-associated macrophage protein signature 140 166 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1144 Vvi-Chr7 15856437 15859321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1144 36 447 Inorganic Solute Cotransporters AT2G23150 84.856 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1144 K21398 - vvi:100268041 869.766