Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1141 ATGGAGATATCATTGTTAAAAAGGCTTCTAAACAAAATTTCCTCATTTTTCCTTTTATCATCTCATGACAACATAGATTCCGAACCTGTTCGGAAGTACTACCAGAAGATAGAAGAGATATTAAAGTTGTTGAAGCCAATACTTAGCACCATTATCGATTCTGAAATAGCTTCTGATGAACTGCTTAATAAGGCATTTGAAGAACTGGGTCGATCTGTTGATGACCTGCAGGAGCTCTTTGAAAACTGCCATCCACTGATGAGTAAAGTTTATTTTGTTCTGCAAATTGAACTATCGATATCAAAGATTAGAACTTCTGGCCTGGAAATTTTTCAGCAGCTTAAATCATCTCATCAATGCCTCCCTGATGAATTGAGTTCGGCATCTCTTGAGACATGCATACAGAAAGTTAAGCACATGGGATATGAACAAACATCAACTATACTTCAAGAAGCAATAAGAAATCAAGTGCAGGGTGCCGGGTCCAGCTCAGAGAGCCTGATGAAACTTGCAGATTGCCTGAGCCTAAGGTCAAACCAGGAGCTTCTAATTGAGGCTGTGGCTCTGGAAAAGCTGAAGGAGAATGCTGAACAAGCTGAAAAAACTGAGGAAGCTGAATATATTGATCAAATGATTACTCTTGCTACCCAAATGCATGATCGTTTTATCATAACGAAACAGTCCCAGAGCTGTAATCCCATTCCAATACCGGCTGATTTCTGCTGTCCTCTCTCCCTTGAACTGATGACAGACCCTGTAATTGTGGCATCAGGGCAAACCTACGAGCGGGCTTTTATCAGGAAATGGCTTGATCTTGGGCTAACTGTTTGCCCTAAAACAAGGCAAACTCTGGCACACACCAACCTAATACCCAACTACACTGTAAAGGCTCTGATTGCAAATTGGTGTGAGTCTAACAATGTGAAGCTGCCTGACCCTGTAAAGTCTTTGAATTTAAATCAGTCCTCACCCCTTCTTGCCCATGCAGAGCCCGGTGCTCCAAGGGATGCACATAATGTTCCTCATTCCAGGGCCAGCCAACCAATGTCACCTGAGTCAACTCGCTTTACTGGTTCTCCTGGAAATAACTTAGTCTCATCTGGTGGAATCCATCGAGAAGGAACTTCTCCATCACATCCCCGTTCTCGCTCAGAGGGTTCCTTGTCCGGTGTAGCTGGAAATGGGCATGGGTCAGATATTGAAGACAGAAGTATGGATTCAGTTGGCCAGCCCTCTACATTACCATCAAGAAAAGAATCTTCTAATTCTACTGGGGCTGATGCAAATTTGTGTCGAACTGCCTCAGCCTCCACTTTGCCTTGTAATGCAAATTCTTCTGAAGGGACGCTAGGGGCTGATATTGGAGTCTACAGCAGTGATGTTTCTGGGGAGATGACTCCAGAGCCACAGGCTGCTGCTGCTAACTTGACAACCCCACAGAGAGAACCTGATTTTCCACTTCGGTTGGAGACAAGGGCTAGGAGCCAAGCAATGTGGCGCCGGCCATCAGAGAGGTTTGTTCCAAGGATAGTGTCTTCTCCAACTACTGAAACGAGAGCTGATCTTTCTGGCGTTGAAGCCCAAGTTCAGAGGCTGGTTGAGGACTTGAAGAGCGAGTCAGTTGAGACTCAAAGAGAGGCCACATCTGAACTTCGACTGCTTGCCAAGCACAACATGGATAATCGGATCGTAATTGCAAACTGTGGGGCCATAAGCCTGTTGGTTAATCTACTTCGTTCAGAGGATGCAAAGGCTCAGGAAAATGCCGTTACAGCACTTCTCAACTTATCTATCAATGACAATAACAAAACTGCAATTGCAAATGCTCAGGCAATCGAACCTTTGATTCATGTCCTGCAGACAGGGAGCCCCGAGGCTAAGGAGAATTCAGCTGCCACTCTTTTTAGCCTCTCAGTGATTGAGGATAACAAGGCCGCGATTGGCAGATCAGGAGCAATTGCACCTCTTGTTGAATTATTAGGCAACGGGACCCCTAGGGGAAAGAAAGATGCAGCCACAGCTTTATTTAATTTGTCAATATTTCATGAAAACAAGACCCGTATTGTGCAGGCTGGTGCTGTGAGGCATCTTGTCGAGTTGATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTTGCTGTTCTGGCTAATCTTGCTACTATTACTGAGGGGAGGCATGCGATTGATCAGGCAGGAGGGATCCCTGTTCTTGTTGAAGTTGTTGAATTAGGTTCTGCAAGAGGGAAGGAGAATGCAGCTGCTGCTCTTCTACAGCTGTGCTCAAACAGCAGTAGATCCTGTATTAAGGTGCTTCAGGAGGGAGCTGTCCCACCATTAGTGGCATTGTCGCAATCTGGCACCCCAAGAGCCAAGGAAAAGGCACAGGCACTTCTGAACTGCTTCAGAAGCCGTCATGCTGGTAGGGGGTGA 2430 0.4572 MEISLLKRLLNKISSFFLLSSHDNIDSEPVRKYYQKIEEILKLLKPILSTIIDSEIASDELLNKAFEELGRSVDDLQELFENCHPLMSKVYFVLQIELSISKIRTSGLEIFQQLKSSHQCLPDELSSASLETCIQKVKHMGYEQTSTILQEAIRNQVQGAGSSSESLMKLADCLSLRSNQELLIEAVALEKLKENAEQAEKTEEAEYIDQMITLATQMHDRFIITKQSQSCNPIPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWLDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPVKSLNLNQSSPLLAHAEPGAPRDAHNVPHSRASQPMSPESTRFTGSPGNNLVSSGGIHREGTSPSHPRSRSEGSLSGVAGNGHGSDIEDRSMDSVGQPSTLPSRKESSNSTGADANLCRTASASTLPCNANSSEGTLGADIGVYSSDVSGEMTPEPQAAAANLTTPQREPDFPLRLETRARSQAMWRRPSERFVPRIVSSPTTETRADLSGVEAQVQRLVEDLKSESVETQREATSELRLLAKHNMDNRIVIANCGAISLLVNLLRSEDAKAQENAVTALLNLSINDNNKTAIANAQAIEPLIHVLQTGSPEAKENSAATLFSLSVIEDNKAAIGRSGAIAPLVELLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATITEGRHAIDQAGGIPVLVEVVELGSARGKENAAAALLQLCSNSSRSCIKVLQEGAVPPLVALSQSGTPRAKEKAQALLNCFRSRHAGRG* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1141 809 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Vvi7g1141 809 SUPERFAMILY RING/U-box 227 313 - -
Vvi7g1141 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 651 693 IPR000225 GO:0005515
Vvi7g1141 809 PANTHER U BOX DOMAIN-CONTAINING 29 800 - -
Vvi7g1141 809 FunFam RING-type E3 ubiquitin transferase 512 807 - -
Vvi7g1141 809 Coils Coil 179 209 - -
Vvi7g1141 809 MobiDBLite consensus disorder prediction 405 427 - -
Vvi7g1141 809 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vvi7g1141 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Vvi7g1141 809 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vvi7g1141 809 MobiDBLite consensus disorder prediction 326 427 - -
Vvi7g1141 809 Pfam Armadillo/beta-catenin-like repeat 642 679 IPR000225 GO:0005515
Vvi7g1141 809 Pfam Armadillo/beta-catenin-like repeat 599 638 IPR000225 GO:0005515
Vvi7g1141 809 Pfam Armadillo/beta-catenin-like repeat 560 597 IPR000225 GO:0005515
Vvi7g1141 809 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vvi7g1141 809 SUPERFAMILY ARM repeat 529 801 IPR016024 -
Vvi7g1141 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 692 733 IPR000225 GO:0005515
Vvi7g1141 809 MobiDBLite consensus disorder prediction 343 373 - -
Vvi7g1141 809 Coils Coil 526 546 - -
Vvi7g1141 809 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vvi7g1141 809 SMART arm_5 599 639 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 681 720 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 721 761 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 640 680 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 762 802 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 558 598 IPR000225 GO:0005515
Vvi7g1141 809 SMART arm_5 512 556 IPR000225 GO:0005515
Vvi7g1141 809 Gene3D - 510 807 IPR011989 -
Vvi7g1141 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1141 Vvi-Chr7 15824813 15829632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1141 196 809 U-box Gene Family AT2G23140 62.016 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1141 - - vvi:100257770 1556.58