Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1134 ATGAGAGAGATTTTGGAGTCGTGTTGCAGACCATTGGAGAGGTGTTTCAAGGCAGGTGGTGGAGATGAGCTTCTATGGCACTTGGATTTGAAGCCACATGCATCTGGGGACTATTCGATTGCAGTAGTGCAAGCCAACTCGTCGCTGGAAGACCAAAGCCAGATCTTCACTTCCCCTTCAGCCACATACATCGGTGTCTACGACGGCCACGGCGGTCCTGAAGCCTCTCGCTTTATTACCAACCACATCTTCCCTTTTCTACATAAGTTCTCGTCTGAACAAGGGGGGTTATCTGCGGAAGTGATAAAAAAGGCGTTTAATGCCACTGAAGAGGAATTCTTGCATTTAGTGAAGCAGTCATGGCTAGCTAGGCCCCAGATTGCATCTGTGGGTTCGTGCTGTCTGGTTGGGGCAATTTCGAATGATGTATTGTATGTAGCAAATCTCGGGGACTCAAGGGCAGTCCTTGGGCGGAAAGTCACAGGAGGGAGGATGAATAGCAGTCAGATGGTGGTGGCGGAGCGATTATCAACTGATCATAATGTTGGAGTTGAGGAGGTGAGGAAGGAGGTGGCAGCCCTTCACCCTGATGATGCCCACATTGTGGTGTATACTCGAGGAGTTTGGCGCATTAGGGGCATTATTCAGGTCTCAAGATCAATAGGAGATTTCTATCTAAAGAAACCCGAATTGAGTAGAGATCCTCTTTTTCAACAATTTGGATCACCTATTCCTTTGAAAAGACCAGTAATGACAGCAGAACCCTCGATAGTAATTAGAAATTTAAAGCCGCACGACTTGTTCTTGATATTTGCATCAGATGGCCTTTGGGAGCAGTTAAGTGATGAAGCAGCTGTTGAAATCGTCTTAAAAAATCCAAGAATTGGAATAGCAAAACGACTAGTGAGAGCTGCCCTTCAGCAAGCAGCAAGGAAAAGAGAAATGAGATATGACGACATAAGAAGAATTGAAAAAGGGGTGAGGCGCCATTTCCATGATGACATCACTGTAATTGTGATGTACCTTGATCATGCACAAGGCTCTCCAAATGGGAGACTCAAGGATCATGGCATTGTTGACTGCACCAGTGCCCCAGCTGACATCTTCTCTCTTAATTCAGATGAAACCCACAACCGATTTCCCATTGTTCACTAG 1155 0.4606 MREILESCCRPLERCFKAGGGDELLWHLDLKPHASGDYSIAVVQANSSLEDQSQIFTSPSATYIGVYDGHGGPEASRFITNHIFPFLHKFSSEQGGLSAEVIKKAFNATEEEFLHLVKQSWLARPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRKVTGGRMNSSQMVVAERLSTDHNVGVEEVRKEVAALHPDDAHIVVYTRGVWRIRGIIQVSRSIGDFYLKKPELSRDPLFQQFGSPIPLKRPVMTAEPSIVIRNLKPHDLFLIFASDGLWEQLSDEAAVEIVLKNPRIGIAKRLVRAALQQAARKREMRYDDIRRIEKGVRRHFHDDITVIVMYLDHAQGSPNGRLKDHGIVDCTSAPADIFSLNSDETHNRFPIVH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1134 384 ProSiteProfiles PPM-type phosphatase domain profile. 37 342 IPR001932 -
Vvi7g1134 384 SUPERFAMILY PP2C-like 43 343 IPR036457 -
Vvi7g1134 384 CDD PP2Cc 44 342 IPR001932 -
Vvi7g1134 384 Gene3D - 29 348 IPR036457 -
Vvi7g1134 384 FunFam Probable protein phosphatase 2C 42 28 350 - -
Vvi7g1134 384 PANTHER PROTEIN PHOSPHATASE 38 340 IPR015655 GO:0004722|GO:0006470
Vvi7g1134 384 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Vvi7g1134 384 Pfam Protein phosphatase 2C 59 311 IPR001932 -
Vvi7g1134 384 SMART PP2C_4 27 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1134 Vvi-Chr7 15744957 15748527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1134 1 348 PP2C-type Phosphatase Gene Family AT3G51370 52.500 4.98e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1134 - K01102 vvi:100254308 764.222