Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1124 ATGAAAGATGCGCACACCCCCCTCGTCCCACTTTTTCCTCTCTTGCTAGTGTGCGCCCTCGTGGCTTTGCGTGCGCCGCTTGCGCTACCTCCTAACCTACGCCCACACTCATCTCCTCCTATCCCCGACAACAAGATCATCACACCCATCGTCGATACTTCCAAGGCCAGGCTCAAGCTCCAACTTTCCGAGATCTCTTCATCCGACGTCGCTCCCATGTCCAAAGCTCGAGTCTACGCCGACGTCAACGTTCTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATCAAGATCCTCAAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATGTCGTCAAGCTGCTTGATATTGTCAGAGACCAGCATTCAAAAACTCCTAGCTTGATATTTGAGTATGTGAACAGTACAGATTTCAAAGTTTTGTACCCCACTCTGACCGATTATGACATACGCTACTACATATATGAGCTTCTCAAGGCATTAGATTACTGTCATTCACAAGGAATAATGCACAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAGTTGCGAAAACTTAGACTGATTGATTGGGGTCTTGCTGAATTCTACCATCCTGGCAAAGAATATAATGTTCGTGTTGCTTCTCGATACTTTAAGGGGCCAGAACTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGATATGTGGAGCCTTGGTTGCATGTTTGCGGGAATGATCTTTCGCAAGGAACCATTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAGATTGCCAAGGTACTTGGTACAGATGAGTTAAATGCATATCTGAACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCTAGTTTCTCCAGAGGCCATTGATTTTCTTGATAAGCTCCTTCGATATGATCATCAGGACAGGCTGACAGCAAGAGAGGCAATGGCACATCCATATTTCTTTCAAGTGAGGGCTGCAGAGAGTAGCAGGATGCGAACACAGTAG 1218 0.4475 MKDAHTPLVPLFPLLLVCALVALRAPLALPPNLRPHSSPPIPDNKIITPIVDTSKARLKLQLSEISSSDVAPMSKARVYADVNVLRPKDYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYRLELDPQLDALVGRHSRKPWSKFIHADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRAAESSRMRTQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1124 405 Gene3D Transferase(Phosphotransferase) domain 1 183 391 - -
Vvi7g1124 405 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Vvi7g1124 405 ProSiteProfiles Protein kinase domain profile. 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1124 405 PANTHER CASEIN KINASE II SUBUNIT ALPHA 68 401 IPR045216 GO:0004674|GO:0006468
Vvi7g1124 405 SMART serkin_6 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1124 405 SUPERFAMILY Protein kinase-like (PK-like) 78 394 IPR011009 -
Vvi7g1124 405 Gene3D Phosphorylase Kinase; domain 1 106 182 - -
Vvi7g1124 405 FunFam Casein kinase II subunit alpha 92 182 - -
Vvi7g1124 405 Pfam Protein kinase domain 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1124 405 FunFam Casein kinase II subunit alpha 183 394 - -
Vvi7g1124 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vvi7g1124 405 CDD STKc_CK2_alpha 87 391 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1124 Vvi-Chr7 15656575 15669458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1124 104 391 Core Cell Cycle Gene Families AT1G76540 29.773 1.09e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vvi7g1124 Pkinase 3.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1124 K03097 - vvi:100259500 764.607