Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1117 ATGATGCAATTCACTGAAACTCCACCACCTCCCTTGCATCAAATTACTTCATTCTCAAATCTTCCAATGAACAATAATCAAATTCATCGAACTCGTCCATGGCCTGGCTTCCCTACATCTAAGGCCCTTGGAAGCTTTGGTGATGCCAATTGCATGGAGCAGCTGCTAGTGCACTGCGCAAATGCAATCGAGAGCAATGATGCCACTCTAGCTCAACAGATCTTATGGGTTCTAAACAATATTGCTCCACCCGACGGTGACTCTAACCAGCGCCTCACTTGTGGCTTCCTTCGAGCTCTCATAGCTCGTGCTGCCAACAGTGGAACTTGCAAAATGTTCACCGCCATGGCAAATGCCCACGCCAATCTTGCTATCAATACCCACAAGTTTTCTGTCATCGAGCTCGCCAGCTTTGTCGACTTAACCCCATGGCACCGCTTCGGATTTGCAGCAGCTAATGCAGCCATACTTGAAGTTGTTGAAGGATACTCAGTCATCCACATTGTTGACCTAAGCTTGACCCACTGCATGCAAATTCCCACTCTGATCGATGCTTTAGCTAATCGCCCAGAGGGACCCCCACTTGTCAAGCTCACAGTAGCCGGTGCCACCGAAGATGTCCCGCCTATGCTCGATCTTTCGTATGAAGAATTGGGTTCGAAGTTAGTTAATTTCGCTAGGTCTAGAAATGTTATGTTGGAGTTTAGGGTGATCCCTTCAACTTCTTCAGATGGGTTCTCCTCCTTAATCGACCAACTTCGGGTGCAACATCTAGTCTATGCAGAAAGCGGCGAGGCCTTAATTGTGAACTGTCACATGATGCTTCATTACATACCAGAAGAGACCCTTTCTGCAATTCACAGCACAAATTCCTCATCTTACTCTGTAGAATCTTCATCTCCTTCCTACCACAGAACCATGTTTCTCAAAGCCCTTCGGACTTTAAACCCAACTATTGTTATTCTAGTAGATGAAGACGCGGATTTCACATCAAACAACTTGGTCTGCAGATTAAGGTCCGCTTTCAATTATCTATGGATACCTTATGACACTATGGACACATTTCTTCCGCGAGGGAGCAAGCAGAGGCAGTGGTATGAAGCTGATATTTGCTGGAAGATTGAGAATGTAATAGCACACGAGGGTCCCCAGAGGGTTGAGCGGCTGGAGCCGAAGGGCCGGTGGGTGCAGCGGATGAGAAATGCCAATTTCCGGAGCATTATGTTTAGTGAAGACACAGTTTCAGAAGTGAAGCACATGCTTGATGAGCATGCAGCTGGGTGGGGATTAAAGAAGGAAGAAGAAGATCTTGTTCTCACATGGAAAGGACACAATGTTGTATTTGCTACTGCATGGGTACCTGCTTAA 1368 0.4656 MMQFTETPPPPLHQITSFSNLPMNNNQIHRTRPWPGFPTSKALGSFGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAANSGTCKMFTAMANAHANLAINTHKFSVIELASFVDLTPWHRFGFAAANAAILEVVEGYSVIHIVDLSLTHCMQIPTLIDALANRPEGPPLVKLTVAGATEDVPPMLDLSYEELGSKLVNFARSRNVMLEFRVIPSTSSDGFSSLIDQLRVQHLVYAESGEALIVNCHMMLHYIPEETLSAIHSTNSSSYSVESSSPSYHRTMFLKALRTLNPTIVILVDEDADFTSNNLVCRLRSAFNYLWIPYDTMDTFLPRGSKQRQWYEADICWKIENVIAHEGPQRVERLEPKGRWVQRMRNANFRSIMFSEDTVSEVKHMLDEHAAGWGLKKEEEDLVLTWKGHNVVFATAWVPA* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1117 455 ProSiteProfiles GRAS family profile. 43 453 IPR005202 -
Vvi7g1117 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 442 IPR005202 -
Vvi7g1117 455 Pfam GRAS domain family 52 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1117 Vvi-Chr7 15603802 15605169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1117 37 454 GRAS Transcription Factor Family AT3G49950 61.848 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi7g1117 GRAS 3.7e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1117 - - vvi:100252691 917.531