Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1116 ATGAGCTGCAACGGGTGCCGTGTGCTTCGGAAGGGGTGTAGCGAGTCGTGTATTCTACGCCCGTGTTTGCAGTGGATCGAGAGTGCTGAGTCCCAAGGCCACGCCACTGTGTTTGTGGCCAAGTTTTTTGGTCGTGCGGGACTGATGTCCTTCATCTCTGCTGTTCCTGAGAACCAGAGACCTGCTTTGTTTCGGTCACTTTTGTATGAGGCGTGTGGCCGGACCGTGAATCCGGTGAACGGGGCCGTGGGGCTACTGGGGACGGGGAACTGGCACGTGTGCCAGGCGGCGATGGAAACAGTCCTCCGAGGGGGTACTCTGCGGGCGATGCCGGAACTTCTTAACGGAGTTTCGACCCCGGAGTGCGACGAAGCCTCTGAGGCCGAGGTAACTTGTACGGACATGTTCAAGCTCAGAGATCCGAATTCGAGCTCACGATCGAAGGTGCCCAAACGGAAGCGCCTGGAAGAGGCATCCAAAGTGCAGTGTACGGATCTGGATCTCCGCTTAACTCCGGGTTTAACCGGTAAAATATCATCTCGAGGCTTGGGAGCGATGAGTTATCTTCCAGAAACTCGCCGGCCGGGAACTCCGTCGATGAATTCAGAAGAATCTGTGACGACCACGTGCTTCGAAACCCCTCATTCGCCAGAAGGAGAAAGAAAGCTTCTCAACTTGTTCCTTTAA 687 0.5546 MSCNGCRVLRKGCSESCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVNPVNGAVGLLGTGNWHVCQAAMETVLRGGTLRAMPELLNGVSTPECDEASEAEVTCTDMFKLRDPNSSSRSKVPKRKRLEEASKVQCTDLDLRLTPGLTGKISSRGLGAMSYLPETRRPGTPSMNSEESVTTTCFETPHSPEGERKLLNLFL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1116 228 MobiDBLite consensus disorder prediction 187 215 - -
Vvi7g1116 228 MobiDBLite consensus disorder prediction 194 214 - -
Vvi7g1116 228 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vvi7g1116 228 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vvi7g1116 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1116 Vvi-Chr7 15589461 15590269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1116 1 227 AS2 family AT3G49940 55.682 1.16e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g1116 LOB 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1116 - - vvi:100261250 462.996