Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1113 ATGGCCGTAAGGCCTTTGCGATTCATCATCTCTCACCGTAGACTCCTCGCCTTTTCCCTCCGCTTACCTTCGTCCTCTTCCTCTCACCTCTCTCAATCTCCGCCGTCCCTTCTCGTATTCCATCGACTCGCCTCTTCCCCAGCCCCACTCTCTCACCCCCAAAAATCTCCCCCTCCTCCTCCGCCGCCACCGTCGCACCACCGCTTTGCCCTGTCCTCGCTGCCCGAAACCCTGGCGCAGAGAATCGGAAAATCCGTTCGCCGCCCCGGCGCTCCCTCCAAGGCTAGGGTTTACGCTGACATCAATGTGATCCGGCCCAAAGAGTATTGGGACTACGAGTCCCTCACCGTTCAATGGGGGGAGCAGGACGATTATGAGGTGGTGAGGAAGGTTGGGAGGGGGAAATACAGTGAAGTGTTCGAGGGCGTGCACTGCACCGACAATGAGAAGTGTATTATTAAGATACTCAAACCCGTGAAAAAGAAAAAGATCAAGAGGGAGATTAAAATACTGCAGAACCTTTGTGGTGGGCCAAATATTGTGAAGTTGCTTGATATTGTTAGAGATCAGCAATCAAAGACCCCAAGTCTAATATTTGAATACGTGAATAATACTGATTTTAAAGTGCTTTATCCAACTCTCTCAGACTATGATATTCGATATTACATCTATGAACTTCTAAAGGCATTAGATTACTGCCACTCACAGGGTATCATGCATCGAGATGTAAAGCCACATAATGTCATGATTGATCATGAGCAGCGTAAACTTCGTCTTATAGATTGGGGCCTGGCAGAGTTCTATCATCCTGGCAAAGAATACAATGTTCGGGTTGCTTCAAGATATTTTAAAGGTCCCGAACTTCTTGTTGATTTGCAAGACTATGATTACTCTCTAGATTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATTTTCCGCAAGGAGCCATTTTTCTACGGGCATGATAATTATGATCAACTGGTTAAAATAGCTAAGGTGCTTGGGACTGATGAATTAAATGCTTATCTGAACAAGTACCGCTTAGAGTTAGACCCGCATCTTGCTGCTCTCGTGGGGAGGCATAGCAGGAAACCATGGACGAAATTTGTTAATGCTGATAACCAACATTTGGCAGTCCCTGAGTCAATTGACTTTCTTGACAAGTTGCTGCGATATGATCACCAAGAAAGGCCAACCGCAAAAGAAGCAATGGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAAGCCGCGCATCATAG 1275 0.4659 MAVRPLRFIISHRRLLAFSLRLPSSSSSHLSQSPPSLLVFHRLASSPAPLSHPQKSPPPPPPPPSHHRFALSSLPETLAQRIGKSVRRPGAPSKARVYADINVIRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRLELDPHLAALVGRHSRKPWTKFVNADNQHLAVPESIDFLDKLLRYDHQERPTAKEAMAHPYFYPIRNAESSRSRAS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1113 424 MobiDBLite consensus disorder prediction 51 66 - -
Vvi7g1113 424 Gene3D Phosphorylase Kinase; domain 1 125 201 - -
Vvi7g1113 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vvi7g1113 424 ProSiteProfiles Protein kinase domain profile. 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1113 424 FunFam Casein kinase II subunit alpha 202 413 - -
Vvi7g1113 424 MobiDBLite consensus disorder prediction 47 66 - -
Vvi7g1113 424 SUPERFAMILY Protein kinase-like (PK-like) 97 414 IPR011009 -
Vvi7g1113 424 CDD STKc_CK2_alpha 106 411 IPR045216 GO:0004674|GO:0006468
Vvi7g1113 424 FunFam Casein kinase II subunit alpha 111 201 - -
Vvi7g1113 424 Pfam Protein kinase domain 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1113 424 Gene3D Transferase(Phosphotransferase) domain 1 202 410 - -
Vvi7g1113 424 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Vvi7g1113 424 SMART serkin_6 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1113 424 PANTHER CASEIN KINASE II SUBUNIT ALPHA 90 420 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1113 Vvi-Chr7 15540506 15554756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1113 123 410 Core Cell Cycle Gene Families AT1G76540 30.990 2.07e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vvi7g1113 Pkinase 3.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1113 K03097 - vvi:100262741 775.007