Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1110 ATGGCTCTGGAGACTCTGAATTCACCCACTGCAGCCACCACGGTACAGTTCCACCATGACTCTGACCTCGACTACCTTGAGCCATGGACCAAGAGGAAGAGGTCCAAGCGTCCTCGCCTCGACAACCCACCTACTGAAGAAGAGTATCTGGCTCTCTGCCTCATCATGCTCGCTCAAGGAGGCCGCGGCGATGTTGCCACCCAGCTCCGCCACCACTCTCCGCCGCCCCCGCCGCCAGCCCTGACGCTCAGTTACAAGTGTAGTGTTTGCAACAAAGCCTTCCCGTCCTACCAGGCGTTGGGCGGACACAAGGCCAGTCACCGGAAGCTCGCCGGAATTGAAGATCAACCCACCACCGCCGGCACCTCCAACGCCTCAAACGCCCTTCCCTCGGTCAACACCAGTGGTAAAATCCATGAGTGCTCCATCTGCCACAAGACTTTCTCCTCAGGTCAAGCTTTGGGCGGACACAAGCGGTGCCACTACGATTCCGGCAGCAACGGCGGCAGCTCAGGAGACGGCGCAATTACGTGGTCGGATGGTACGCGTTGGAGCCACAGTCACCGTGACTTTGACTTGAATCTACCCGCACTGCCGGGTTTCTCGCCTGCTCCATGCGTTGACCGTGGAGGAAAAAGTCAACTTCCCTGCGAAGAGGAGGTGGAGAGCCCATTGTCGGCGAAGCATCATCCAGGAGTATAG 702 0.5869 MALETLNSPTAATTVQFHHDSDLDYLEPWTKRKRSKRPRLDNPPTEEEYLALCLIMLAQGGRGDVATQLRHHSPPPPPPALTLSYKCSVCNKAFPSYQALGGHKASHRKLAGIEDQPTTAGTSNASNALPSVNTSGKIHECSICHKTFSSGQALGGHKRCHYDSGSNGGSSGDGAITWSDGTRWSHSHRDFDLNLPALPGFSPAPCVDRGGKSQLPCEEEVESPLSAKHHPGV* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1110 233 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Vvi7g1110 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Vvi7g1110 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Vvi7g1110 233 Pfam C2H2-type zinc finger 139 163 - -
Vvi7g1110 233 Pfam C2H2-type zinc finger 85 109 - -
Vvi7g1110 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 197 IPR044653 GO:0003700
Vvi7g1110 233 SUPERFAMILY beta-beta-alpha zinc fingers 85 161 IPR036236 -
Vvi7g1110 233 SMART c2h2final6 139 161 IPR013087 -
Vvi7g1110 233 SMART c2h2final6 85 107 IPR013087 -
Vvi7g1110 233 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vvi7g1110 233 Gene3D Classic Zinc Finger 82 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1110 Vvi-Chr7 15505941 15506642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1110 1 197 C2H2 Transcription Factor Family AT5G67450 44.309 3.77e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi7g1110 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1110 - - vvi:100264451 467.618