Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1107 ATGGGAAAGGCGGACAGCATCTCAGAGGGATCTCCTCTGCTTGCCAATGGAGTTCCCCCAGTGGCACCTCCATTACCAGGTCCTGCAACAACCAGTTATCGCCAAAAGGGGCTGGTGAAGGATGGAAGATGCAGCTGTGTCAATGCAGCAGTAAGGGATTTGTGGGATCGCCTCTTCGATGAAGCTTGCGGAGCAGATGTCACTATTAATACTGATAATGGTGGCATCCTCTATGCACATGCTAGCATTCTTGGAATGTCCTCTCCAGTGATGAAAGGCATGTTAAAGCAAACGAGAGGCCGTGGCCGCTGGCAATCGATCTCCATTCGTGGTGTTCCACTTGATGCAGTTCGGGTTTTCATTAGATTCTTGTATTCATCCTGCTATGAGCAAGAAGATATGGACGAATTTGCAGTTCCTCTGTTGGTTTTATCGCACGTGTTTGTGATTCCCCATTTGAAGCGAGTGTGTGAGCACCACCTAGAGCATGGTTTGCTAACCATAGACAATGTAATAGATGTTTTTCAGCTTGCATTATTATGTGATGCTCCTCGCCTTACCCTCATCTGTCACCGCATGATCCTGAAGAACTTTAAGGCTGTTGCTAATAATGAAGGGTGGAAAGCAATGAAAAAGAGCCATCCAATCCTAGAAAAAGAAATTCTTGAGTCAGTCACTGAAGCAGATACAAGGCAAAAGCAGAGGGTCAGAAGATTAAACGAGAAGAAGATCTATTTAGAACTATATGAAGCAATGGAGGCCCTTGTTCATATATGTAGAGATGGTTGCCGGACAATTGGTCCATATGACAAGATTTTGAAAGAAGACCAGGCACCGTGTAAATATGAAGCCTGTAAAGGACTGGAATTGCTGGTCAGACACTTTGCTGGTTGCAAACTCAGAGCTCCTGGTGGTTGCACACATTGCAAGAGAATGTGGCAGCTCTTGGAATTACACTCCCGTCTCTGTGCTGATTCAGATATATGCAGGGTTCCTTTATGCAGGAATTTTAAGGACAGAATCAAGAAACAGAGCAAGAAAGATGAGATGAAGTGGAGAATACTAGTGAGAAAAATCTTGAGAGCAAAGGGCATTGGGAAAGCACCATTCTTTTAA 1116 0.4462 MGKADSISEGSPLLANGVPPVAPPLPGPATTSYRQKGLVKDGRCSCVNAAVRDLWDRLFDEACGADVTINTDNGGILYAHASILGMSSPVMKGMLKQTRGRGRWQSISIRGVPLDAVRVFIRFLYSSCYEQEDMDEFAVPLLVLSHVFVIPHLKRVCEHHLEHGLLTIDNVIDVFQLALLCDAPRLTLICHRMILKNFKAVANNEGWKAMKKSHPILEKEILESVTEADTRQKQRVRRLNEKKIYLELYEAMEALVHICRDGCRTIGPYDKILKEDQAPCKYEACKGLELLVRHFAGCKLRAPGGCTHCKRMWQLLELHSRLCADSDICRVPLCRNFKDRIKKQSKKDEMKWRILVRKILRAKGIGKAPFF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1107 371 SMART TAZ_2 242 335 IPR000197 -
Vvi7g1107 371 Pfam TAZ zinc finger 249 334 IPR000197 -
Vvi7g1107 371 Gene3D TAZ domain 241 364 IPR035898 -
Vvi7g1107 371 FunFam BTB/POZ and TAZ domain-containing protein 2 167 237 - -
Vvi7g1107 371 Pfam BTB/POZ domain 57 163 IPR000210 GO:0005515
Vvi7g1107 371 MobiDBLite consensus disorder prediction 1 29 - -
Vvi7g1107 371 CDD BACK 167 224 - -
Vvi7g1107 371 Gene3D - 167 240 - -
Vvi7g1107 371 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 36 368 IPR044513 -
Vvi7g1107 371 ProSiteProfiles BTB domain profile. 65 133 IPR000210 GO:0005515
Vvi7g1107 371 SUPERFAMILY TAZ domain 242 343 IPR035898 -
Vvi7g1107 371 SUPERFAMILY POZ domain 50 163 IPR011333 -
Vvi7g1107 371 FunFam BTB/POZ and TAZ domain-containing protein 2 239 364 - -
Vvi7g1107 371 Gene3D Potassium Channel Kv1.1; Chain A 43 166 IPR011333 -
Vvi7g1107 371 SMART BTB_4 65 165 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1107 Vvi-Chr7 15481007 15482955 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vvi7g1107 BTB 8.2e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1107 - - vvi:100855250 753.821